Oryza sativa japonica (Japanese rice) (RAPDB): Os08t0176800-01
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Entry
Os08t0176800-01 CDS
T02163
Symbol
Os08g0176800
Name
(RAP-DB) Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).
KO
K14298
mRNA export factor
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Os08t0176800-01 (Os08g0176800)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os08t0176800-01 (Os08g0176800)
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os08t0176800-01 (Os08g0176800)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
Os08t0176800-01 (Os08g0176800)
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Os08t0176800-01 (Os08g0176800)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Motif
Other DBs
RAP-DB:
Os08t0176800-01
LinkDB
All DBs
Position
chr08:complement(join(4501670..4501720,4501452..4501538,4501306..4501371,4501016..4501209,4500408..4500549,4500206..4500286,4499660..4499788,4498640..4498717,4498096..4498167,4497336..4497416,4497199..4497246))
AA seq
342 aa
AA seq
DB search
MATLGLAPNMNPNKSFEVLPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGSSQPK
ASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAQTVAMHDAPVKEIAWIPQM
NLLVSGSWDKTLRYWDTRQSNPVHVQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNPQ
TEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQSKNFTFKCHREGNDI
FSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAYA
VCYDWSRGAENHNPATAKTSIYLHSPQESEVKGKPRIATSRK
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcttggtcttgccccaaacatgaatccaaacaagtcatttgaggtactgcct
aatccaggtgactccgtatcgagcctcagttttagcccaaagagcaaccttctggtggca
acttcctgggataaccaggtgcggtgctgggagattgttggtgggagtagtcaaccaaag
gcatctatatcgcatgaccagccagtcctctgttcagcttggaaggatgatggaactact
gtgttctctggaggctgtgataaacaagtaaaaatgtggcctctgttgtctggtgggcag
gctcagactgttgcaatgcatgacgcacctgtcaaggagatcgcttggattcctcaaatg
aatcttcttgtctctggaagctgggataagactctaaggtattgggacacaaggcaatca
aatcctgtccatgttcagcaacttcctgagcgctgttacgcacttacagtgaattatccc
cttatgattgtgggaactgctgatcgtaatctggtcgtcttcaacttgcagaatcctcag
acggagttcaagcgcatccaatcgccactcaaataccagactaggtgtcttgctgcattc
ccggatcaacaaggatttttggtgggttccatagaaggaagagttggtgtgcatcatatt
gatgactcacagcaaagcaaaaatttcacgttcaaatgtcacagggaagggaatgatatt
ttctctgtcaattcactcaattttcacccagttcatcacacgtttgcaactgctggatca
gatggcgcatttaatttctgggataaggatagcaaacaaagactgaaggcttttagtcgg
tgccctcttcctattccttgcagtaccttcaacagtgatgggtcgatatttgcttatgca
gtctgctatgactggagccgtggggctgaaaaccacaaccctgccactgcaaagacatcc
atctatcttcacagtccacaggaatctgaggttaaagggaagccgagaatcgcaacaagt
agaaagtga
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