Desulfovibrio piger: DESPIGER_1730
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Entry
DESPIGER_1730 CDS
T04638
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dpg
Desulfovibrio piger
Pathway
dpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESPIGER_1730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpg03019
]
DESPIGER_1730
03016 Transfer RNA biogenesis [BR:
dpg03016
]
DESPIGER_1730
Enzymes [BR:
dpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DESPIGER_1730
Messenger RNA biogenesis [BR:
dpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DESPIGER_1730
Transfer RNA biogenesis [BR:
dpg03016
]
Prokaryotic type
tRNA degradation factors
DESPIGER_1730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_2
DUF5865
Motif
Other DBs
NCBI-ProteinID:
SFV73562
UniProt:
A0A1K1LFT6
LinkDB
All DBs
Position
I:complement(1824219..1826444)
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AA seq
741 aa
AA seq
DB search
MNQDIFNPTRVTATVGGKEIIFETGRLANQAHGAVWMQCGGTVVLVTVCSQALEFDKGFF
PLTVEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLAS
VISADQENESDVLALTGASAAVMLSPLPFEGPVAGGRIGRIDGRFVLNPTFEEQARSDLN
IVFAASRDALTMVEGEATFVPEDVIIDALEWGRKEIQPLIDAQLKLRELAGKEKMPFTPH
QDDPVLVARVQELAREAGLEEAMRVPEKLARKDARKAVKDKVMEALLNDPAWAESDALKE
VGEIIGDLEKKIVRARIVNEGVRIDGRDTRTVRPIQIQTSVLPRAHGSAIFRRGETKSLV
VTTLGSSTDEQRMDSLSGDVTKRFMLHYNFPPFSVGEVKPVRVSRREIGHGALAEKSLRP
VMPADADFPFTVRVVSETVESNGSSSMAAVCGGCLSLMDAGIPISAPVAGVAMGLIKEGD
KFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTDIMRQAMQQAHEGRLHI
LAEMAKALPEPRKELSRYAPQHAEIFVNPDIIRLIIGPGGKNIKAITTATGASVDIEDSG
RVSIFAPTADALEKAREMVTYYDQRPELGKNYTAKVKKIMEIGVIVEVLPNVEALVHVSQ
LDVNRVEQPGDVAHLGEDMVVKVIEINGDRIRASRKAVLLEEQGHPWNPEETARPQRDRG
NRGDRGGRRDRGDRGGRGDRR
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggatatcttcaatcctacccgcgtcacggccaccgtgggcggcaaggaaatc
attttcgagaccggccgtctggccaaccaggcccacggcgccgtctggatgcagtgcggc
ggcacggtggtgctggtgaccgtctgctcccaggctctggagttcgacaagggattcttc
cccctcaccgtggaatattccgaaaagatgtacgccgccggccgcatccccggcagcttc
ttccgccgcgagatcggccgtccctccgagcgtgagaccctggtctcccgcctcatcgac
cgtcccatccgtcccctgttccccaagggcctgaacgaagacgtgcaggtgctggccagc
gtcatctccgccgaccaggagaacgaatccgacgtgctggccctgaccggcgcttccgcc
gccgtcatgctctcgcccctgccgttcgaaggcccggtggccggtggccgcatcggccgc
atcgacggccggttcgtgctcaaccccaccttcgaggagcaggcgcgcagcgacctgaac
atcgtgttcgccgcttcccgcgatgccctgaccatggtggaaggcgaggccaccttcgtg
cccgaggacgtcatcatcgacgccctggaatggggccgcaaggagatccagccgctcatc
gacgcccagctcaagctgcgcgaactggccggcaaggaaaagatgcccttcaccccccat
caggacgatccggtgctggtggcccgcgtgcaggaactggcccgcgaggccggccttgag
gaggccatgcgcgtgcccgagaagctggcccgcaaggacgcccgcaaggccgtcaaggac
aaggtcatggaagccctgctcaatgaccccgcctgggccgagagcgacgccctgaaggaa
gtgggcgagatcatcggcgatctggaaaagaagatcgtgcgtgcccgcatcgtcaacgaa
ggcgtgcgcatcgacggccgcgacaccaggaccgtgcgccccatccagatccagaccagc
gtgctgccccgcgcccacggctcggccatcttccgccgcggcgagaccaagtccctggtg
gtgaccaccctgggttcctccaccgatgaacagcgcatggacagcctgagcggcgacgtg
accaagcgcttcatgctgcattacaacttcccgcccttcagcgtgggcgaggtgaagccc
gtgcgcgtctcccgccgcgagatcggccacggcgccctggccgaaaagtccctgcggccc
gtcatgccggccgacgccgacttccccttcaccgtgcgcgtggtctccgagaccgtggaa
tccaacggctcctcttccatggctgccgtgtgcggcggctgcctctccctcatggatgcg
ggcatccccatcagcgccccggtggccggtgtggccatgggcctcatcaaggaaggcgac
aagttcatcgtgctcaccgacatcctgggcgatgaagacgccctgggcgacatggacttc
aagatcgccggtaccgcggaaggcgtcaccggcgtgcagatggacatcaagatcaccggc
ctgaccactgacatcatgcgccaggccatgcagcaggcccacgaaggccgcctgcacatc
ctggccgagatggccaaggccctgcccgagccgcgcaaggaactgtcgcgctacgcgccc
cagcatgccgagatcttcgtcaatcccgacatcatccgcctgatcatcggccccggtggc
aagaacatcaaggccatcaccaccgccaccggcgcttccgtggacatcgaagattccggc
cgcgtgtccatcttcgcccccacggccgatgccctggaaaaggcccgcgagatggtcacc
tactatgaccagcgtcccgaactgggcaagaactacaccgccaaggtcaagaagatcatg
gagatcggcgtcatcgtggaagtgctgcccaatgtggaagccctggtgcacgtctcccag
ctggacgtgaaccgcgtggagcagcccggcgatgtggcccatctgggtgaagacatggtg
gtcaaggtcatcgagatcaacggtgaccgtatccgcgccagccgcaaggccgtgctgctg
gaagaacagggccatccctggaaccccgaagagaccgcccgtccccagcgcgaccgcggc
aatcgcggtgaccgcggcggccgtcgtgaccgcggcgaccgcggcggcaggggcgaccgt
cgttaa
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