KEGG   Danio rerio (zebrafish): 553406
Entry
553406            CDS       T01004                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dre01009]
    553406 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dre03036]
    553406 (kdm5c)
Enzymes [BR:dre01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     553406 (kdm5c)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     553406 (kdm5c)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    553406 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD
Other DBs
NCBI-GeneID: 553406
NCBI-ProteinID: NP_001116706
ZFIN: ZDB-GENE-060810-94
Ensembl: ENSDARG00000006124
UniProt: B0S6L0
LinkDB
Position
8:36983520..37026607
AA seq 1578 aa
MMDVGEEFVPPPECPVFEPSWEEFADPLGYIAKIRPIAEKSGICKIRPPPDWQPPFAVEV
DNFHFTPRIQRLNELEAETRVKLNYLDRIAKFWEIQGSSLKIPNLERRILDLFSLAKIVT
EEGGFESVSKERRWARVAQKLGYPPGKNIGSLLRSHYERIVYPFELFQSGASLPPRKPRQ
YDSDEVDREYKPHSIPLRQSVPPSKMSSYGRRANRLQPEGPEDPTHHPLTTGSQHISSPE
PTEEDIEKNPELKKLQIYGAGPKMMGLGLVPRDKTRKKDDLPQTVIVRDSAVKDEPAETA
VTKSDPDIPPPPPNLIIKEDVDDDKSHIDKPNDPSDEPCTKMTMRLRRNLNNPQFVDSFV
CRMCGRGDEDEKLMLCDGCDDNYHTFCLIPPLTDPPKGNWRCPKCVAEECKKPSEAFGFE
QATREYTLQSFGEMADTFKADYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHS
KEFGSGFPVNNGKRQLSEEEEEYARSGWNLNVMPVLEQSLLCHINADISGMKVPWLYVGM
VFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPCSAAEKLEEVMKKLTPELFEFQPDLLHQ
LVTIMNPNILMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPTG
RSCIEHYRQLRRYCVFSQEELTCKMAACPEKLDLNLAAATHREMFIIVQEERKLRKSLLE
RGIKEAEREAFELLPDDERQCDKCKTTCFLSALACSNCPERLVCLYHAQDLCSCPSEKLY
LRYRYTLDELLAMLHRLKVRAESFDSWANRVKEALEQDEGNKIDIKDLEVLKEEAADKKF
PNNELLQRLNTVFVDIEKCESCSTELLSNSQSSRMTLKELKTLVDTMQNLPCVIKQQDEV
QLILQKIEEFDSRAQVLVDSTKSEWKQDSPLPVATEIQALLEEGASLPVIAPACELLSGL
LEQGRWLGEVRRTLGPEGSEVTLTVLRNLMESGCNVPQSVSVETAMAELQELLTIAERWE
EKAQICLEDRQKHHLSTLEAIVNEAQLIPVQLPNILSLQACLSRARAWVTDLEEIQNGEH
YPCLDDLEGLVAIGRDLPVKMEELKQLELQVASAHSWREKASKTFLKKNSQHSLLEVLCP
CVEKSKKMEDNSMVTEADSDVNVLGLTAQDLRDPGAIVMAFKEGERLEKEALLRLQQVNL
AKPSIENGVSTDQDSIKTEKKQSNSMETDVPLNSDSPVLQNGGSSHSLTSSQTVCICGGP
PRPLLHRCHLCKDWFHGGCVSFPPLLATSDTHLTKPLCWWDWNTRFLCPRCQRSRRPRLE
TILALLVALQRLPVRLPEGEALQCLTERAINWQGRAKQALDTPEVQEALDRLQQVEDEMV
SIKEEEPEEKKKWNGDAVIVLSDSEEAEDGVIDLTEDGNSPKKNERNAVNGTQSGCENGI
GRKSSAHEVTGVESLLSLVPSLKGPVVELNTSVRAQLEELQLEGDLLEVTLDQTHAIYRI
LQASSQPPQDTLRTLIQIELQEQRSSGRGNKSKDSKRKRKSQKTEGEPKSTEASDCKKTK
ALNLSPPTDTHTDVVMFS
NT seq 4737 nt   +upstreamnt  +downstreamnt
atgatggatgtaggggaggagtttgttccaccacctgaatgtccagtatttgaaccatca
tgggaggagtttgcagatccattgggatatattgccaaaatccgtccaatagcagaaaag
tctggaatatgcaagattcgtccaccacccgactggcagccaccgtttgctgtggaggtg
gacaattttcatttcacaccccgtattcagaggctcaatgagctagaggctgagacacga
gtaaagctgaattacctagacagaattgccaagttctgggagatccagggatcctctctg
aagatccccaatttagagcgacgtattctggatctgttcagcttggccaagattgtcaca
gaggaagggggctttgagtctgtgagtaaggaaaggcggtgggctcgtgtggcacagaaa
ctcggttatcctcctggtaaaaacattggctctctcctgaggtcccactatgagaggatt
gtgtatccatttgagttgttccagtctggagccagtttaccgccacgtaaacccaggcaa
tatgacagtgatgaggtagaccgagaatacaaaccccactccattcctttgcgtcagtca
gtgccaccatccaagatgagcagctatggacgaagggccaatcgccttcagcctgagggt
cccgaggatccaactcaccaccctcttacaactggctctcaacacatctcctcgccggag
cctacagaagaagacattgagaagaaccctgagctgaaaaagctacagatctatggggct
ggacctaaaatgatgggccttggtcttgtacctcgagacaagacgcggaagaaagatgat
ctgccgcagactgtaattgtgcgggacagtgctgtgaaggatgagcctgcagagacggcg
gttacaaaatcagatccagacattccaccgccacccccaaatctcatcatcaaggaggat
gtcgatgatgacaaaagtcatattgacaaacctaacgatcccagtgatgagccttgcact
aagatgaccatgagactccgacgcaacctcaataatccacagtttgtggactcgtttgtg
tgtcgaatgtgtggacgcggggatgaggacgagaagttgatgctctgtgatgggtgtgat
gataattaccacacattctgcctgatacctccactcacagacccacccaagggcaactgg
cgctgtcccaaatgcgtagcagaggagtgtaaaaagccatcagaggcattcggcttcgaa
caggccacaagagagtacacgttacagagcttcggtgaaatggccgacactttcaaagca
gactacttcaacatgcctgtccatatggttcccacagagctggttgaaaaggagttttgg
aggttggttagcagtattgaagaagatgtaactgtagaatatggtgccgatattcactca
aaagaatttggtagtggttttcctgtcaacaacggcaagagacaattatcagaggaggaa
gaggaatatgcccgcagcggctggaacctaaatgttatgccagtgttggaacagtcattg
ttgtgccacatcaatgcagatatctctggcatgaaggtgccatggctatatgtgggcatg
gtgttctctgctttctgttggcacatagaggaccactggagttactccatcaattattta
cactggggcgagcccaaaacatggtatggagttccatgttcagctgcagagaagttggag
gaggtgatgaagaaactcacacctgagctatttgagttccagccagacctgctccaccag
ctagtcaccatcatgaacccaaatatactcatgagtcatggagtgccggtggttcggacc
aatcagtgtgctggggagtttgtcatcacctttccacgagcttaccacagcggttttaat
cagggatataactttgccgaagctgtcaacttctgcactgcagattggttgcccacaggg
cgctcttgtattgagcattaccggcagctgaggcgctactgtgtgttctctcaagaggaa
ctcacctgcaagatggcggcctgcccagaaaagctggatctgaacctggcagccgccaca
cacagggagatgttcatcatagtgcaggaagagaggaaactacgcaaaagcctactggaa
aggggcatcaaggaagctgaaagggaggcctttgagttgctgcctgatgatgaacgacag
tgtgacaaatgtaagaccacctgcttcctctcagctctggcatgttcgaactgcccagag
cgtctcgtctgcctctatcatgcccaggacctctgctcttgcccgagtgaaaaactctac
ctcaggtatcgctatactctggatgaactgttggccatgttgcatcggttgaaagttcgc
gctgagtcttttgactcttgggctaaccgcgtgaaggaagccctagagcaggatgaaggc
aacaaaatagatattaaagatctggaggtattaaaagaagaggcagctgacaagaagttc
cccaataatgagctgctccagcgcctcaacactgtcttcgtggacatagagaagtgcgag
agctgcagcacagaactcctcagcaacagccagagcagtagaatgaccctgaaggagctg
aagactctggtggacaccatgcagaacctgccatgtgttataaagcagcaggacgaagtt
cagctgatattgcagaagatagaggagtttgattcccgtgctcaagttctggtcgacagc
accaagagtgaatggaagcaggactctcctcttcctgtggccactgagatccaggctctg
ctagaggaaggtgcatcactaccggttattgccccagcttgtgagcttttgagtgggctg
ttggagcaggggcgctggctgggagaggtcaggcggacgttagggccagagggcagtgag
gtgactctgactgtgctaaggaacttgatggagtcgggctgtaatgtaccacagagtgtg
tcagtggagactgcaatggctgaactgcaagagctcttgacaatagctgaacgctgggag
gagaaggcgcagatatgcttggaggacaggcagaaacaccatttatcaacgctggaggct
attgtgaatgaggctcaactaataccagtccagctgcctaatatcctgtccctacaggcc
tgcttgagccgagctcgggcttgggtcacagatctggaggaaattcagaatggtgagcac
tatccatgtttggatgacctggagggtctggtagccattgggagggacttgccagtgaag
atggaggagctgaagcagctggagctgcaggtggccagtgctcactcctggagagagaag
gccagcaaaacctttctgaagaagaacagccaacatagtctgctcgaggtgctgtgccca
tgtgttgagaagagcaagaagatggaggacaactcaatggttacagaagcagattcggat
gtcaatgtattaggcctcacagctcaggacctcagagacccaggagctattgtaatggca
tttaaagaaggggagcgtctggagaaagaagccctcctccgcctccagcaggttaatttg
gcgaaacccagtatcgaaaatggagtaagcactgaccaggacagtatcaagacagaaaag
aaacagagtaactccatggagacagatgtgccccttaactcagacagtcccgtgctgcaa
aatggaggctcttcccattccctcacctctagccaaactgtgtgtatttgtggtggccca
cctcgccccttgcttcaccggtgccatctgtgcaaagactggttccatggaggttgtgtg
tccttcccaccattgttggccacttcagacacgcatcttacaaaacccctctgctggtgg
gactggaacacgcgttttctctgtccgcggtgccagcgatcccgacggccacggctggaa
actattctagcgctgctggtggcgctgcagaggttacctgtacggctgccagagggagaa
gcgttacagtgtcttacagagagagctattaactggcaaggtcgagccaaacaggcatta
gacactccagaagtacaggaggcgctagacagactgcaacaagtagaggatgaaatggtc
agtataaaagaggaagaaccagaggagaaaaagaaatggaatggagatgctgtaattgtg
ctttctgactcggaggaagcagaagatggtgttatcgatctgacggaagatgggaactcg
ccaaaaaagaatgaaaggaacgctgtcaatggtacacagtctggctgtgaaaatggaatt
ggcaggaagtcgagtgcacatgaagttacaggggtggagtctctgttgtcactagtgccg
agtcttaaagggccagtggtggagctgaacacatctgtcagagcacagctggaggagctt
cagcttgaaggagacctgctggaggtcacgcttgaccagacacacgccatctaccgcatc
cttcaggcatcatctcagccgccccaggacaccttgcggacactcatacagattgaactg
caggagcagagaagctcaggtcgtggcaacaagtcgaaagactccaagaggaagagaaag
agccagaaaaccgaaggcgagccgaaatccacagaggcttcagactgcaagaagacgaaa
gccctcaatctcagcccacctacagacacacacacagatgttgtgatgttttcctga

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