Maridesulfovibrio salexigens: Desal_2495
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Entry
Desal_2495 CDS
T00969
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dsa
Maridesulfovibrio salexigens
Brite
KEGG Orthology (KO) [BR:
dsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsa03016
]
Desal_2495
Enzymes [BR:
dsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Desal_2495
Transfer RNA biogenesis [BR:
dsa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Desal_2495
Prokaryotic type
tRNA splicing ligases
Desal_2495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACS80551
UniProt:
C6BY21
LinkDB
All DBs
Position
2732000..2733427
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AA seq
475 aa
AA seq
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MNIKLLKQESPCRWRMEKYGPMRVDALFFGNKDIILELDDTTVSQVRDVASLPGVVGQVC
AMPDAHSGYGFPIGGVGAFDEKHGVISAGGVGFDISCGVRTLTTGLKKQDLITCDAKLAD
LLFKRIPSGAGVGGDIILEGDQLDEMLLGGASWAVGQGVGKPEDLGRIEGNGRNNFADPC
KVPLKAKQRMRNQMGSLGSGNHYLEVQYVEEIYDKAKAAAFGIGIDDVVVSIHCGSRGLG
HQIAKDYLPMMAKAAPGFGIKLPHKDIACAPINSELGRDYLGAMGAGINCALANRQAITH
LVRECFTDTLPQADLRLLYDVSHNTCHREEFKINGKKKNLWVHRKGATRALGPGHPELPR
EFKKHGQPVIIGGSMGTASYILSGTKDSAEISFSSCCHGAGRVMSRAKARKNFKGNKIQK
ELGRHGIIIRTGSFKGIAEEAPLAYKDVDMIIESTQTAGIAEKVARLRPILCIKG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaattacttaagcaagaatcaccctgccgctggcgtatggaaaaatacggc
cccatgcgtgttgatgcgctattctttggaaacaaggatatcatcctcgaactggatgac
accacggtttcgcaggtacgggatgtggcctctcttccgggcgtggtcggccaggtctgc
gccatgccggatgcccattccggttatgggttccccatcggcggtgttggagcttttgat
gagaagcacggggttatttcagcaggtggagttggatttgatatttcctgcggagtacgc
actcttactaccggattgaagaaacaggatttgatcacttgtgatgccaagcttgcggat
ttgcttttcaaacgcattccgtccggcgctggtgttggaggtgatattatccttgaaggt
gatcagcttgatgaaatgctgcttggcggtgcttcatgggctgtaggtcaaggagtcgga
aaaccggaggatctcggcaggattgaggggaacggcagaaataactttgctgatccgtgc
aaagtccctctcaaagccaagcaacgcatgcgtaaccagatgggatcactgggatcaggc
aaccattatctggaagtacagtatgtggaagaaatttacgataaagctaaagccgcggcc
ttcgggatcggaattgacgatgtggtggtcagcatccattgcggatcacgaggattgggg
caccagattgccaaggattacctgcccatgatggccaaagccgctcccggattcggtatc
aaacttcctcacaaagatattgcctgcgcgccgattaattccgaattgggccgcgactac
cttggagccatgggtgcgggcatcaactgcgcccttgccaaccgtcaagccatcacccac
cttgtgcgtgaatgttttacagatactttgccacaggctgatttgcggctgctttacgat
gtgagccataacacctgccatcgtgaagaattcaaaattaacggcaaaaagaaaaatctc
tgggtgcaccgtaaaggcgcaacccgcgcactcggccccggacaccctgaactgccaaga
gaattcaaaaaacacggccagcctgtaattatcggcggaagcatggggacagcgtcttac
atcctttccggaacaaaagactcagcagaaatatctttttcatcctgctgtcacggtgct
ggaagggttatgagccgagccaaagcgcgtaagaatttcaaaggaaataaaatccagaaa
gaacttggcaggcacggaattataatccgtaccggatctttcaagggcattgccgaagaa
gctccccttgcctacaaggatgtggacatgatcatcgaatcaactcaaactgccggaata
gcagaaaaggttgcccgcctacgacccattttatgtataaaaggctaa
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