Dinoroseobacter shibae: Dshi_2001
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Entry
Dshi_2001 CDS
T00612
Name
(GenBank) putative xylose repressor
Organism
dsh
Dinoroseobacter shibae
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ROK
HTH_IclR
MarR_2
HTH_28
HTH_24
MarR
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
ABV93740
RoseoBase:
Dshi_2001
UniProt:
A8LP58
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Position
2120658..2121902
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AA seq
414 aa
AA seq
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MPEDAATRDTPGCGPMLPDSGRNAKPLRQAVFEHVRAAGHAPRMDIARALGISPGSVTTL
TSDLIEAGFLTEIAAPARETGRGRPPVALAVVPAARYVLGLRLSDEMHTVSLSDFSGTEL
ATAHRASQPGRYAVEALLTEMATLIDEVLAAAALPRDRVAALGVGLPGAVHHETGRVAWS
PILAGQDHALQAIIEDRFGLPAHLENDANVLTLAELWFGAGRAMQDFAVVTIEQGVGMGL
VLNNRLFRGAQGLGLELGHTKVQLDGALCRCGQRGCLEAYLADYALVREASTALDRDPRS
AQTAAAMLESLFDQAKAGNGAAKAIFQRAGRFLSLGLANVVQLFDPELIILSGARMRYDY
LYAEEVLAEMQRMTLHPATPRSRVEIHAWGDQVWARGATALALSAVTDALMGER
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgccagaggatgccgcgacgcgcgacactcccggatgcgggcccatgctgcccgattcg
ggccgcaatgcaaaacccctgcgtcaggcggtattcgagcatgtgcgcgccgccgggcac
gcgccgcgaatggacatcgcccgcgccctcggcatctcgcccggttcggtcaccacgctg
acctcggacctgatcgaggcggggtttctcaccgaaatcgccgcccccgcccgcgagacc
gggcgcggtcgcccgcccgtggccctcgccgtggtgcccgcggcccgctacgtgcttggc
ctgcgcctgtcggacgagatgcacacggtcagcctgtcggatttttccggcaccgaactg
gccaccgcccaccgcgcgagccagccggggcgctatgcggtcgaggcgctgctgaccgag
atggccaccctgatcgacgaggtgttggcggcagccgccctgccccgcgaccgggtggcg
gcgctcggcgtcggtctgccgggggccgtccatcacgaaaccggccgcgtcgcctggtcg
ccgatcctcgccgggcaggatcatgccctccaggcgatcatcgaagaccgcttcggcctg
cccgcgcatctggagaatgacgccaatgtcctgacgctggccgagctgtggttcggtgcg
ggccgcgcgatgcaggacttcgccgtggtcacgatcgaacaaggggtcggcatggggctg
gtgctgaacaaccggttgtttcgcggcgcacaggggctcgggctggagctggggcacacc
aaggtgcagctcgacggggcgctctgccgctgtgggcagcgcggctgcctggaggcgtat
ctggccgactacgcgctggtgcgcgaggcctccaccgcgctcgaccgcgacccccgctcg
gcccagaccgccgccgccatgctggagagcctgttcgatcaggccaaggccggcaacggc
gcggccaaggcgatctttcagcgcgccgggcgcttcctgtcgctgggactggccaatgtg
gtgcagcttttcgatccggaactcatcattctgagcggcgcgcggatgcgctacgactac
ctttatgccgaagaggtgctcgccgagatgcaacgcatgaccctgcaccccgccaccccg
cgcagccgggtcgagatccacgcctggggcgaccaggtctgggcgcgcggggcgacggcg
ctggcgctgtcggcggtcacggacgcgctcatgggggagagatga
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