Dickeya solani IPO 2222: A4U42_20070
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Entry
A4U42_20070 CDS
T04410
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A4U42_20070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_20070
Enzymes [BR:
dso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A4U42_20070
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A4U42_20070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ANE77441
LinkDB
All DBs
Position
complement(4674138..4677632)
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AA seq
1164 aa
AA seq
DB search
MSENRLQPGLMAIHSNHPEALRDVLVSWMAANPLGGLENELILVQSNGIGQWLKLALARD
TRDGGCGVAAALDVQLPSRFFWQVYRSVLGHDQVPETSPFDKSLLVWRLVRLLPELLAQP
EFAALARFLQQDADLRKRYQLAERLADLFDQYQVYRADWLAQWAAGHDVLATSRRGVEPL
PDDQRWQPLLWRALLRDTGEVLSGTSRAALHRRFLDDVQRWGDAERPAGLPSRVMIFGIS
SLPQQALELLAAIGRWTQVFMCVHNPCEYYWGDIIADKDLLRAERTRQRRKPGMPDVLAL
EELHQHAHPLLAAWGKQGRDYIGLLDEYDQREHYSSLIERNDLFFSNGDDCLLHQLQDDI
LDLRPLAESRARWPVIVPHQDRSIRFHVAHSAQREVEVLHDQLLAAFAADPTLRPRDVIV
MVPDINGYAPHIQAVFGLIDRQDPRYIPFSVADRGPRQNNLLLAALERLLNLPQSRVAVS
DVLDLLEVPSVRQRFAITEEQLPLLQRWIRAANVRWGLHARQRQSLDLPDAPEQNSWFFG
LRRMLLGYAVGAGDAWRDIEPLDEIGGLDAVLAGQLALLLDRLDYSWQQLCQPATPVQWG
DRLRALLSTFFAADEGEDGFMLLQLDEGLQNWLEACESVALEQALPLSVVREHWLGLFEQ
SSLTQPFFAGAVTFATLMPMRAIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRPGDRS
RREDDRYLFLEALLSARERLYISWVGRSIHDNSERPPSVLVAQLRDHLSNGWRTVDGQEV
LSALTVEHRLQPFSPDYFTAGSPLFSYAREWRAGLSPQDGLLPQNAPATEAALDEYPQDG
ALTLRQLADVVRDPVRSFFRLRLNVWFEQEDATSQDQEPFAIDALENWRLQHELIQVQKA
ALRQRIPREQALAEQLARIARRGELAPGGFTAVLEQDLAEPMADLFTRYEQEQEKWPEAL
PDEPLSLPDVPLEDWLNELRTDGQGNRCRLVLESGGLLHPMRRSYRLDKLLPFWVAHLAG
HLGGQPLHSTLVSKNGTVHLPALEPEQAKAYWQALVDAWREGMRHPLPLAVKTGFRWLET
GGEPDQPPDGEAGKAARQCYEEHDPANRKFAESASNAYLARAFPTFDHLWANGEFARWAQ
QLLAPLYLTLKAASARNKKSGGQS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaacaggttacaacccggtttgatggcgatccacagcaaccatcctgaagcc
ctgcgcgacgtgctggtgtcgtggatggcggctaatccgctgggcgggctggaaaacgag
ctaattctggtgcaaagcaacggtatcggacagtggctgaaactggcgctggcacgcgat
acccgcgacggcggatgcggcgtcgcggcggcgctggatgtccaattgccgtcgcgtttt
ttctggcaggtctaccggtcggtgctgggtcacgatcaggtgccggaaacctcgccgttc
gataaatcgctgctggtgtggcggttggtgcggttgttgccggagctactggcgcagccg
gaattcgccgcgctggcgcgctttctgcagcaggatgccgatctgcgcaagcgttaccaa
ctggccgaacggctggccgacctgtttgaccagtatcaggtgtatcgtgccgactggctg
gcgcagtgggccgccgggcatgatgtgctggcgaccagccggcgcggcgtggagccgttg
ccggatgatcagcgttggcaacccttgctgtggcgggcgttgctgcgggataccggcgag
gtgctgtccggcaccagccgtgcggcgctgcaccggcgttttctggacgacgtgcaacgg
tggggcgacgccgagcggccggcgggattgccgtcccgggtgatgatattcggtatttca
tcgctgccgcagcaggcgctggaactgctggcggccatcggccgctggacccaggtgttt
atgtgcgtgcataacccgtgcgaatactactggggcgatattatcgccgacaaggatctg
ctgcgtgccgaacgcacccgtcagcggcgcaaacccggcatgccggacgtcctcgcgctg
gaagagctgcatcagcacgctcatccgctgctggcagcctggggcaaacaagggcgcgat
tacatcggcctgctggatgaatacgaccagcgcgagcattactcctcactgattgagcgt
aacgacctgtttttcagcaacggcgacgactgcctgctacatcagttacaggacgatatc
ctggatttgcgaccgctggcggaaagccgggcgcgctggcctgtcatcgttccgcatcag
gatcgttcgatccgttttcatgtcgctcacagcgcgcagcgcgaagtggaagtgctgcac
gaccaactgctggcggcgtttgccgccgacccgacgctgcgcccgcgcgacgtgattgtg
atggtgccggacatcaacggctatgcgccgcatattcaggcggtgttcgggctgatcgac
cggcaggacccgcgctatatcccgttcagcgtggcggaccgcgggccgcggcagaacaac
ctgttgctggcggcgctggagcggttgttgaatttaccgcagtcgcgcgtggcggtcagc
gatgtgctggatttgctggaggtgccgtcggtacgccagcgttttgccatcaccgaagag
cagttgccgctgctgcaacgctggattcgggccgccaacgtgcgctgggggctgcacgcc
cgccagcgccagagtctcgacttgcccgacgcgccggaacaaaacagctggtttttcggc
ctgcggcgtatgctgctgggctacgcggtgggtgccggcgacgcctggcgggatattgag
ccgctggatgaaatcggcgggctggatgcggtgctggccggtcaactggcgttgctgctc
gaccggctggattacagttggcagcagctatgtcagcccgcgacgccggtgcagtggggc
gatcggctacgcgcgctgctgagcacgttttttgcggcggatgagggtgaggacggcttt
atgctgctgcaactggacgaggggttgcagaactggctggaggcctgcgagtcggtggcg
ctggagcaggcattgccgctgtcggtggtgcgggaacactggctgggactgtttgagcag
tcgagcctgacccagccgttttttgccggcgccgtcaccttcgccaccctgatgccgatg
cgcgccatcccgtttcgccacgtctgcctgctgggcatgaacgatggcgactatccccgc
aaccgggtgccgctggacttcgacctgatggggcaggattaccgtcccggcgaccgttcc
cgccgcgaagacgaccgctacctgtttctggaggcgctgctgtcggcgcgtgaacgttta
tatatcagttgggtggggcgcagtatccacgacaacagcgagcggccgccctcggtgctg
gtggcgcagttgcgcgaccatctaagcaacggctggcggaccgtcgacgggcaggaagtg
ttgtcggcgctgacggtagagcaccggttgcagccattcagcccggattattttaccgcc
ggcagcccgttgttcagctatgcccgcgaatggcgcgccggcctgtcgccgcaagatgga
ttgttgccgcagaacgcgccggcaacggaagccgcgctggacgagtatccgcaggacggc
gcgctgacgctgcgccagctggcggatgttgtccgtgacccggtgcgcagcttcttccgt
ctgcggcttaacgtctggttcgagcaggaagacgccaccagccaggatcaggagccgttt
gctatcgacgcgctggaaaattggcgcttgcaacatgagctgatccaggtgcagaaagcg
gcgttacgccagcgcatcccccgcgaacaggcgctggcggagcaactggcacgcatcgcc
cggcgcggcgaactggcgccgggcggctttaccgcggtgctggagcaggatttggcggag
ccgatggcggatctgttcacccgttacgagcaggaacaggaaaaatggcctgaagcgctg
cctgacgaaccgctgtcgctgcccgatgtcccgctggaagactggctgaacgagctgcgc
accgacgggcagggcaaccgatgccgtttagtgctggaaagcggcgggttgcttcatccc
atgcggcgcagctaccgcctcgacaagctattgccgttctgggtggcgcatctggccggg
caccttggcgggcaaccgttgcacagcacgctggtcagcaagaacggcaccgttcacctg
ccggcgctggagcctgagcaggcgaaagcatactggcaggcgttggtggatgcctggcgg
gaaggcatgcgtcacccgctgccgctggcggtgaaaaccggatttcgctggctggagacg
ggcggagaaccggatcaaccgccggacggcgaggcgggtaaagcggcacgtcagtgttat
gaggagcatgatccggccaaccgcaagtttgctgaatcggcgtctaacgcctatctggcc
cgcgctttcccaacgttcgaccacctgtgggccaacggcgagtttgctcgctgggcgcag
caactgctggcgccgctgtacctgacgctgaaagcggcgtcggcgagaaataaaaaatca
ggaggccagtcatga
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