Dictyoglomus thermophilum: DICTH_1401
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Entry
DICTH_1401 CDS
T00774
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dth
Dictyoglomus thermophilum
Pathway
dth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DICTH_1401 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dth03400
]
DICTH_1401 (mfd)
Enzymes [BR:
dth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DICTH_1401 (mfd)
DNA repair and recombination proteins [BR:
dth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DICTH_1401 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACI18694
UniProt:
B5YFB2
LinkDB
All DBs
Position
1336972..1340184
Genome browser
AA seq
1070 aa
AA seq
DB search
MGSSSKLIQQKMPILLEKVLRSSEFSNLEKEINSRSNIKLFGIYKGFFPLLFLYLKRYKR
PILWVTNNEEDLSIWEDLQEDLELSILPPYVHLPYERPLRSPQVQGKRLKAISDIIYNNS
FSIVASLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFLAENLYQRTPQVEKIGEYS
IRGGILDIFPPLYENPIRIEFFGDEISSIRFFNLEDKRSIKTTKEVILTPISELIEDKNE
ESYFLKNKEIKTYLFSYLPKDTILVFENHKASLALLEKWTGKGLANFEKRRTKENLPEGL
YLTDYELQNFISKYQVLDLNSTEPDLVFTIYSPPSYRGTNEFFEKNIKSFLENGWEVHIF
SEHQDIIRTRLKNLNVKYLTEEKVREGFLWENEKVLVITDYEIFGKKRKRKPIRYEKGLK
PKDLYLLKDGDYVVHVNYGIGIFRGLKKLKIDDVEKEFIYIEYANNSFLYVPLEEMHLIQ
RYVSSSPEPPQISRLESHQWEETKRKVKESAKEIAEELLKVYAQRELTEGFAFSPDSPLQ
EELEASFPYVETEDQIKALKEIKRDMESKKPMERVLIGDVGFGKTELALRASFKAVLDGK
QVAILVPTTILAYQHWKVFRERLEVFPVNVEILSRLKPKSEQKRIIERIRKGEIDIIIGT
HRILQKDVEFKDLGLIIVDEEHRFGVLQKESFKKKYPHVDILYLSATPIPRTLSMVLSGI
RQFSVLETPPENRLPIQTFVVEYNPEIIQEGIRRELERGGQVYYVCNDIERLEKIKEELT
KLVPEATYSIAHGKMDDEELTEVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEH
MGLAQLYQLRGRIGRSYKQAYAYFLHAPLKKLSLDSIKRLEALKEFSSLGSGLRLALRDL
EIRGAGKILGKEQHGHINSVGFYLYLQLLEEAINELKNSQGKSEKNKVNCRITHPFPAII
PEYYISQSSDRIYYYQKLAHLEDINDIDKIRKELEDIYGPIPEPVENLFILSQIKFFAEK
IGIEKIEISEDKTKLTYSKGIERTLNLPRGNYKKKIQFLLQFLKDISNIK
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtagctcaaaacttatacaacagaaaatgcctattctcttagaaaaggtctta
agaagtagtgaatttagcaatttagaaaaagaaattaactcaaggagcaatattaagctt
tttggaatttacaagggattctttcccttactttttttatacctaaaaagatataaaaga
ccaattttatgggtaactaataatgaagaggacttaagcatatgggaagacttacaagaa
gatttggaattaagcatattacctccttatgttcatcttccgtatgaaagacctctaaga
tcgccacaggttcaaggaaaaaggttaaaagctatttccgacataatttacaacaatagt
ttttctatagtagcttccttaaaatccctaatctaccctcttatacccaaagaaaatatt
gaaaaaagaattttaaaaattaaagtgggagaagaaataactcgagaaaagatagaaaaa
ttcctcgcagaaaacctatatcaaagaacacctcaggtagaaaagataggagagtacagt
ataagaggtggaattcttgatatattccctccactatatgaaaatcccataagaatagaa
ttttttggagatgagatttcttctataagattctttaacttagaagacaaaagatctata
aaaactacaaaagaagttattttaacccccatttcggaattgattgaagataaaaatgaa
gagagctattttctaaaaaacaaagagataaaaacatatctattttcatatttacctaaa
gacaccatcttagtctttgaaaaccataaagcaagccttgcattacttgagaaatggact
ggaaaaggacttgcaaattttgaaaaaagaagaactaaagaaaacctacctgaaggttta
tatcttaccgactatgaattacaaaatttcatttctaaataccaagttttagacttgaac
agcacagagccagatcttgtatttactatttactctcctccatcctaccgaggtactaac
gaattttttgaaaaaaacataaaatccttccttgaaaatggctgggaagtacacatattc
tcagaacaccaagacataataagaacaagattaaaaaacctaaatgtgaaatacttaacc
gaagaaaaagtaagagaaggattcttatgggagaatgaaaaagtccttgtgattaccgat
tatgaaatatttggtaaaaaaagaaaaagaaaaccaataagatacgaaaagggattaaaa
ccaaaagatttatatctattaaaagatggagattatgtggtacatgtaaattatggaata
ggaatattcaggggcttaaaaaagcttaaaatagacgatgtagaaaaggaatttatatac
attgaatatgctaacaatagctttttatatgtacccttagaggaaatgcatcttatccaa
agatacgtatcctcttcaccagaaccccctcagataagcagattagaatctcaccaatgg
gaagaaaccaaaagaaaagtaaaagaatcggcaaaagagattgcagaagaattgttaaaa
gtttatgcccagagagaattaacagagggttttgccttttctccagatagtcctcttcag
gaagagcttgaagcaagtttcccttatgtagaaacagaagatcaaataaaagcccttaaa
gagataaaaagggatatggaatcaaaaaaacctatggaaagggtactgattggagatgtg
gggtttggtaaaacagaacttgccttaagagcaagttttaaagcagttctagatggaaaa
caagtggcaatcttagtgccgactactattcttgcctaccaacattggaaggtatttcga
gaaagattagaagtatttcctgtaaacgtagagatcttaagcagactcaaacctaaatca
gaacaaaagagaataatagaaagaataagaaaaggggaaatagacattattataggaacc
caccgaatattacaaaaagatgtggaatttaaggacttgggtctcatcatagtagacgaa
gaacatagatttggagtcttacaaaaagaatcctttaaaaagaaatatccacatgtggac
attctttatctttctgcaactccgattcctagaaccctatctatggttctttctggaata
aggcaattttctgtgcttgaaactcctcctgaaaaccgattgcctattcaaacctttgtt
gttgaatataatcctgagatcattcaagaaggaataagaagagaattagaaagaggtgga
caagtatattacgtatgtaatgatatagaaagattagagaaaataaaagaagaactaaca
aaacttgttccggaggcaacttattccatagcacacggaaaaatggacgatgaagaacta
acagaggttatgagtaatttctatgatggcaaaatagacgtcttaatagccaccactatt
atagaatcaggtatcgatgttccaaatgccaacacattatttgtagaaaatgcagaacat
atgggacttgctcaactttaccaactgagaggaagaataggaagatcctataaacaagca
tatgcctattttcttcatgctcctctaaaaaaactatctttagatagcattaaaagactt
gaagcactaaaggaattctcaagccttggatcaggattaagacttgccttaagagacctc
gaaataagaggagcagggaaaattcttggaaaagagcagcacggacatataaactctgtt
ggtttctatttatatcttcaacttttggaagaagctataaatgaattaaagaacagtcaa
ggaaaaagtgaaaaaaacaaagtaaattgccgtattacacatccatttccagcaatcata
ccagaatactacataagtcaaagtagcgatcgtatatattattatcagaaattagctcac
ttagaagatataaatgatatagataagataagaaaagaattagaagatatctatggtcca
attccagagccagtggagaacttgtttattctatctcagataaagttttttgcagaaaaa
ataggcatagaaaaaattgaaatatcagaagataaaacaaaattaacctattcaaaaggc
attgaaagaaccttgaacctaccaagaggaaactataagaaaaagatccaatttctgctc
caattcctcaaagacatctccaatattaagtaa
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