Desulfobacula toluolica: TOL2_C14450
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Entry
TOL2_C14450 CDS
T02268
Symbol
rne
Name
(GenBank) Rne: predicted ribonulcease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dto
Desulfobacula toluolica
Pathway
dto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOL2_C14450 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dto03019
]
TOL2_C14450 (rne)
03009 Ribosome biogenesis [BR:
dto03009
]
TOL2_C14450 (rne)
Enzymes [BR:
dto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TOL2_C14450 (rne)
Messenger RNA biogenesis [BR:
dto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TOL2_C14450 (rne)
Ribosome biogenesis [BR:
dto03009
]
Prokaryotic type
rRNA processing factors
TOL2_C14450 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Csd3_N
KH_1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
CCK79608
UniProt:
K0NIK1
LinkDB
All DBs
Position
complement(1697321..1698793)
Genome browser
AA seq
490 aa
AA seq
DB search
MTQKILINALDSDENRIVALKDNKLEEFHIETTAKQVTQGNIYKGIVTRVEPSLQAVFVD
YGEPKNGFLQKNEIHKDYFQDVEAGEKALFKLIKKGQELIVQVTKDPISQKGAMLTTFIS
LPGRLSVLMPGNSTKGVSRKISDEDERKRLVGIIKKMDIPSGFGMIVRTAGKNATKTMLT
ADLKYLMRVWNNIDKTSIKSPAPSLLYKEQTLAVRSLRDYLTSDIKEILIDSPEIFKEVK
DFIGVIAPKQKKIVKQFKGEKPIFTKYQLEDQIASIYKREVTLKSGGFLVIEQTEALVSI
DVNSGKSTKKKNIEETAFHTNLEACEEVARQLRLRDMGGLIVVDFIDMKESRHKAEITKT
LKKNLKSDKAKTKVGGITKFGLLEMSRQRIRHSITFGSYETCRHCKGRGQTPSVETQGLA
FLRQLKLRTLKPGIKEATGVLPNDVAGYLLNKKRAELTEIESKKSVFITIEGDPNMVSGE
NKIIIIPHNN
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaaaaattctgatcaatgctttagattctgatgaaaacagaattgttgcgcta
aaagataacaaacttgaagaatttcacattgaaaccactgcaaaacaggtcacacagggc
aatatttacaaagggattgtcacaagagtcgaacccagccttcaggcggtgtttgtggat
tatggcgaacctaagaatggttttcttcaaaaaaacgaaatccataaagactattttcag
gatgttgaagctggtgaaaaggccctgtttaaacttatcaaaaagggccaggaactgatt
gttcaagttacaaaagatcccataagccaaaaaggggccatgctgacaaccttcatctcc
ctgcccggaagattatctgttctgatgccgggcaattcaacaaaaggggtgtcccggaaa
atcagtgatgaggatgagcgaaagagacttgtcggtatcataaaaaaaatggatattcct
tcaggattcggcatgattgtcaggactgccggaaaaaacgccacgaaaaccatgctgacg
gctgatttaaaatacctgatgcgagtatggaataatattgacaaaacttcaatcaaaagc
cctgccccttcgttgctttataaagagcaaacacttgccgttcgatccttaagagattat
ttaacatcggatattaaagaaattctcatcgacagccctgaaatttttaaagaggtaaaa
gatttcattggggttatcgctcccaaacaaaaaaaaatagtcaagcagttcaagggcgaa
aaacccatatttaccaaatatcagcttgaagatcagattgcctctatttataaaagggag
gtaaccctcaaatccggggggtttctggtcattgaacaaacagaagcccttgtttccatt
gatgttaattcaggaaaatccaccaaaaagaaaaacatagaagaaaccgcttttcatacc
aatcttgaagcatgcgaggaagtggcccggcaattgaggctgcgcgatatgggcggtctg
attgtggttgatttcatagacatgaaagagagccgccataaggctgaaatcaccaaaaca
ctgaaaaaaaacttaaaatccgacaaggctaaaacaaaagtagggggcatcacaaaattt
ggtttactggaaatgtcacggcaaagaatccggcattcaatcacttttggaagctatgaa
acctgcaggcattgtaaaggcaggggccagacgccttcagtagaaacccagggtctggca
tttttaaggcagttgaagctcaggacattaaaacccggaatcaaggaagcaacaggagtt
ttacccaatgatgtggcaggttatctgttgaacaaaaaaagagctgaactcactgaaatt
gaatcgaaaaaatctgttttcattacgattgagggtgatccaaatatggtttcgggggaa
aacaaaatcattatcattccccataacaattga
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