Pectobacterium atrosepticum SCRI1043: ECA1108
Help
Entry
ECA1108 CDS
T00186
Symbol
sbcC
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
eca
Pectobacterium atrosepticum SCRI1043
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eca03400
]
ECA1108 (sbcC)
DNA repair and recombination proteins [BR:
eca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ECA1108 (sbcC)
Archaeal homologous recombinant proteins
ECA1108 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
AAA_21
cobW
nSTAND3
AAA_25
SMC_N
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAG74018
UniProt:
Q6D867
LinkDB
All DBs
Position
complement(1255587..1259270)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTQEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGQLSAGNNDLMTRNTAECLAEVEFEVKGVGYRAFWSQRRARNAPDGNLQAPKAELALIE
GGKILSEKLNDKKEMTTQLTGLDFGRFTRSMMLSQGQFAAFLNAKADDRAELLEELTGTD
IYGLISERVYEKHKQANVALNTLQARASGIQLLTDEQRQQVETQLAELLQQEQQGNAERE
QALTTLRWFEQLTQRQTQLTNTQAQHASAESAIQQAKPQLDKLANSEPAEKLRPLHQERE
RYRQESLTLAQQIEQLTEKQSAEQLSLTTLRQQEEKAEQDVTKHKLERQKQELLINEQVV
PLDHRIATLEQQKNQQQDELEKTQRRLHADESKQTQIAAEQQQAKQQLEQIQSYRQQHAH
HQQWGEQLPLWRTQFRQLRQFHDEQQKLSPKQAQHTEQSATLQQEAETLTAQQREQQTVV
DAARELFTHHDEALKNQEAQQPLSALHQRFNQLIDQRTARQQLATISDQFQRLYARKQQY
LIRQDEIQGHISLSEALKKQQQSEHEQRSQHLTDLETVYRQEERIVKLEAERQRLQAGDP
CPLCGSTEHPAIERYQALQPSETQRRLTALQQEVSQLATALANTTARLASLEQQRETLQQ
DIAQNDGEHQTLLQQWQDVSERLQVNYTLEQQDAVAAWVAQRETEEQDIRQQIGTREQQQ
KRWQESKDSLTANETLLRELDQKIALNAQQQTSLRVTQEEIVQSLQNVQRQLEQYTEEIT
QTLANAGLLLPEDHAQDGWLVQRESEWQDWKTKEQELSRLTPRLATLESDLQHLNHSVTE
AKQLLQVQQQQLEQHNGALKTNQQARLELFGDRKTADVREHLQRSSQQYDDALRLALSAR
QHAETTLSRLTGELTRTQQQYEQSTHQRDSATERFTQALRQSAFTDETTFLNALLDEQER
QTLQALKEKLYQSLQQAAAFHQQAEQALLEQQQKRPASLQEEATQEAIQQQQSELNEVLK
TNLRQQGEFQRQLSDDRQQRQNQQVLLNEIAQSQQMYDDWETLNSLIGSSKGDKFRKFAQ
GLTLDHLIYLANLQLSRLHDRYQLKRKPGGELELLVMDTWQADAERDTKTLSGGESFLVS
LALALALSDLVSHKASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKTIGVISHVEAM
KERIPVQIKVQKVNGLGVSRLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagtctgcgcttaaagaatctcaacgcgctgaaaggcgaatggaagatc
gacttcacgcaggagccattttccagcaacggcttgtttgcgattaccggcccaacaggc
gcgggaaaaactacgctgctggatgccatctgtctggcgctttatcacgagacaccacgg
ttgggtcagctttctgctggtaataatgacctgatgacccgtaacaccgcagagtgcctc
gccgaggtcgagtttgaagttaaaggcgtcggatatcgcgctttctggagccagcgtcgg
gctagaaacgccccagacggtaacttacaggcacctaaggccgaacttgcgctcattgaa
ggcggcaaaatcctgagcgaaaagctcaatgacaagaaagagatgaccacgcagctcact
gggctggatttcggccgcttcacgcgatccatgatgctgtcgcaggggcagtttgctgcg
tttctcaacgcgaaagccgacgacagagcggaactgctggaagagctgactggtacggat
atttacggactgatttccgaacgcgtctatgaaaaacacaaacaggcaaacgtagcattg
aacacgctacaggcgcgcgcatcgggtattcagctgttgaccgatgagcagcgtcagcag
gtagaaacacagcttgccgagctgctccagcaagagcaacagggcaacgccgagcgtgag
caagcactgactacgctacgctggtttgagcaattgacgcagcggcaaacgcagctcacc
aacacgcaggcacaacacgcgagcgccgaatcagccattcagcaggccaagccgcagctc
gacaagttagccaacagcgaaccggcagaaaaactgagaccgctacatcaggaacgagag
cgctatcggcaggagtctcttacgctcgcccagcagattgaacaactgactgagaaacaa
agcgcagaacagttgtctttgacaacgttacgccagcaggaagaaaaggcagaacaggac
gttactaagcataaactggaacgtcagaaacaagagctgttgatcaatgaacaggttgtg
ccgcttgaccatcgtattgccacgttggagcagcaaaaaaaccagcagcaggacgagctg
gaaaaaacgcagcgtcgcctacacgctgacgaaagtaaacaaacgcagatagcggcagaa
caacagcaagccaaacaacagcttgaacagattcaatcttatcgccagcaacacgcgcat
catcaacaatggggagaacagcttcctctgtggcgcacacagtttcggcaattgcgccag
tttcatgacgagcaacaaaagctaagcccaaaacaggcacagcacaccgaacagtcggcg
acgctacagcaagaggccgagacgctgacggcacagcagcgtgaacagcaaacggtcgtt
gatgcagcacgcgagttgttcactcatcacgatgaagcactgaaaaatcaagaagcacag
cagccactttccgccttgcaccagcggtttaatcaactcatcgatcagcgaaccgcacgc
caacagctcgcgacaatcagcgaccagttccagcgtctttacgcccgtaaacagcagtac
ctcatcagacaagatgagatacaagggcatatcagcctgtctgaagccttaaagaaacaa
caacagtctgagcatgagcaacgcagccagcatctgaccgatctggaaacggtgtatcgg
caggaagaacggatcgttaagctggaagctgaacggcaacggctacaggctggcgatcct
tgcccgttgtgcggttcgaccgagcatccggcgattgaacgctatcaggcgctgcaacca
tccgaaactcaacgtcgcctgacggcgctacaacaggaagtaagccaattagcaacggca
ctggcgaatacgacggcacggctggcctcgctagagcagcagcgggaaacactgcaacag
gacatcgctcagaacgatggcgaacatcaaacgctgttgcaacagtggcaagatgtcagt
gagcgcttacaagttaactatacattggaacagcaggacgcggttgccgcttgggttgca
cagcgcgagaccgaagaacaggatattcgccagcagattggcacacgcgaacagcagcaa
aagcggtggcaggaaagtaaggattcactgacagctaatgagacattgctccgggaactc
gaccagaaaatcgcgctgaatgcccagcaacagacctcgctacgcgtcacgcaggaagaa
atcgtccagtcattacaaaacgtgcagcggcagctagagcagtacactgaggaaatcacg
cagacgctggcaaatgcgggccttcttctaccggaagatcacgcacaggatggttggttg
gttcagcgcgagagcgaatggcaagactggaaaaccaaagagcaagagctgtctcgctta
acgcctcgattagccacgctggaaagcgatctccagcatctgaatcacagtgtgaccgag
gcaaagcagctactacaggtacagcaacagcagttagaacagcacaacggcgcactcaaa
acgaaccagcaagcgcggcttgagcttttcggcgacaggaaaacagcggacgttcgtgaa
cacctgcaacggagcagccagcagtatgacgatgcgctccggttagctctgtcagcacgt
cagcacgctgaaacaacgttgagccgcctgaccggagagctgacccgcacgcagcagcaa
tatgaacaaagtacgcatcaacgcgatagtgcgactgaacgattcactcaggctttacgg
caaagtgcttttactgatgaaaccaccttcctgaatgcgctgcttgatgaacaggaacga
cagaccttgcaggcattgaaggagaaactgtatcagagcttgcagcaggcagcagcgttt
caccagcaggctgaacaggcattacttgaacagcaacaaaaacggcctgcatccctacaa
gaagaagcaacgcaggaagcaatacaacagcagcaatcagaactgaatgaggtgctgaaa
accaacctgcggcaacagggtgaattccaacgtcagttatctgacgatcggcaacagcgc
cagaatcaacaggtcttgcttaacgagatcgcccaaagccagcaaatgtatgatgactgg
gagacgttaaactccctgatcggttcaagtaaaggggataaattccgcaagtttgctcag
gggctaacgttggatcatctgatctacctcgccaatctccagctttcacgcctgcacgat
cgttaccagctaaaacgtaaacccggtggcgagctggaacttctcgtgatggatacctgg
caggcagatgccgagcgcgatacaaaaacgctatccggcggcgagagctttttggtgagt
ctggcgctggcgctggcgctatccgatctagtcagccataaagccagcatcgactctctg
tttctggatgaaggcttcggtacgctggatgccgaaacactggatatcgcactggatgca
ctcgataacctgaacgcttcgggcaaaaccatcggcgtcatcagccatgtcgaagccatg
aaggagcgtattcccgtacagatcaaagtgcagaaagttaacggactaggcgtcagcaga
ctggcaccgcagtacgccgtttag
DBGET
integrated database retrieval system
