Equus caballus (horse): 100069057
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Entry
100069057 CDS
T01058
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04820
Cytoskeleton in muscle cells
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100069057 (COL5A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100069057 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100069057 (COL5A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100069057 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100069057
NCBI-ProteinID:
XP_023485052
Ensembl:
ENSECAG00000009361
VGNC:
16744
LinkDB
All DBs
Position
25:37215696..37385418
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AA seq
1843 aa
AA seq
DB search
MDVHTRWKARSPLRPGAPLLSPLLLLLLLWAPPPSRAAQPADLLKVLDFHNLPDGITKTT
GFCATRRSSKGPDVAYRVTKDAQLSAPTKQLYPASAFPEDFSILTTVKAKKGSQAFLVSI
YNEQGIQQIGLEMGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIALSVHKKNVTL
ILDCKKKTTKFLDRSDHPMIDVNGIIVFGTRILDEEVFEGDIQQLLFVSDHRAAYDYCEH
YSPDCDTAVPDTPQSQDPNPDEYYPEGENEGETYYYEYPYYEDTEDVSKEPPPTKTPVEA
ARETTEIAEELTLPPTEAAPVTDASEGPGKEDDVGIEDYDYVPSEDYYTPPPYEDLNYGE
GLENPDENPDQLPEPRARAEVPTSTVSTSNGSNPAPPPEEGRDDLEGEFTEETIKNLDEN
YYDPYYDPTVSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLLEGPPGPEG
PAGLPGPPGTTGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSK
GPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRG
VQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPG
PPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGLKGNVGPQG
EPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKG
GQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPG
PRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANG
EKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQG
PTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERG
HPGPPGPPGEQGLPGVAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKG
NEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG
LQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSG
ADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPG
PRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG
PSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTG
SPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPG
PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPG
EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKG
EAGHPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQMLDDGDGENYMDYADGMEEIFGSL
NSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTA
GGATCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLS
ASAHQNITYNCYQSVAWQDAATGSYDKAMRFLGSNDEEMSFDNSPYIRALVDGCATRKGY
QKTVLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFLG
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggacgtccacacccgctggaaagcgcgcagcccgctccgcccgggcgccccgctgctg
tccccgctgctgctgctgctgctgctgtgggcgccgcctccgagccgcgcagctcagcca
gcagatctcctgaaggttctagattttcacaacttgcctgatggaataacaaagacgaca
ggtttctgtgcaacgagacgatcttccaaaggcccggatgttgcctacagggttacaaaa
gatgctcagctcagtgcacccaccaagcagctgtaccctgcatctgcatttcctgaggat
ttctccattctaaccactgtgaaagccaagaaaggcagccaggccttcctggtctccatt
tacaacgagcagggcatccagcagatcggcctggagatgggccgctctcccgtcttcctc
tacgaagaccacacagggaaaccagggccggaggactatcctctcttcaggggcatcaac
ctgtcagatggcaagtggcacagaattgctctcagcgtccacaagaaaaatgtcaccttg
atcctggactgcaaaaagaagaccaccaaattcctggaccgcagtgaccaccccatgata
gacgtcaacggcatcatcgtgttcggcacccggattctggatgaggaagtgtttgagggt
gacatccagcagctgctcttcgtctcagaccaccgggcagcttatgattactgcgagcac
tacagccccgactgtgacactgcagtccccgacaccccccagtcgcaggaccccaaccca
gatgaatattacccggaaggagagaatgaaggcgagacctattactacgagtatccctac
tatgaggacacggaagacgtgagcaaggagccccccccaaccaagacgcctgtggaagct
gctagagagaccacagagattgccgaggagctgacactgccccccacggaagccgctccg
gtgaccgacgccagcgaggggcctgggaaggaggatgacgtgggcatagaggactatgac
tatgtgcccagcgaggactactacacgccgcccccttacgaggacctcaactacggcgag
ggcctggagaaccctgacgagaaccccgaccagctgcccgaacccagggccagggccgag
gttcccaccagcaccgtcagcacctccaacggctccaacccagctccgcctccagaggaa
gggagagatgacctggagggtgagttcaccgaggaaaccatcaagaacctggacgagaac
tactacgacccttactacgaccccaccgtctccccgtcggagatcgggccgggcatgcct
gcaaaccaggacaccatctacgaagggattggaggcccacggggcgagaaaggtcagaaa
ggagagcccgctatcatcgaaccaggtatgctcctcgaggggccgccaggcccagaagga
cctgcgggtctcccaggacctccaggaacaacaggtcccactggccaagtgggtgaccct
ggagaaaggggtccccctggacgcccaggccttccgggtgctgatgggctacccggccct
cctggaaccatgctcatgctgcctttccgcttcggagggggcggcgatgcgggctccaaa
ggccccatggtctcagcccaggagtcccaagctcaagccattctgcagcaggcccggttg
gcattgagggggccagctggcccgatgggtcttacggggagacccggccccatgggcccc
cccgggagcggaggcttgaagggcgagccaggagacatggggcctcagggtccccgtggt
gtgcagggcccacctggcccggcgggaaagcccggaagaagggggcgggctgggagtgac
ggagcaagagggatgcctggacaaactggccccaagggtgaccgcggcttcgacggcctg
gctgggttgccgggagagaagggccacaggggtgaccctggcccctctggcccgccagga
cctccaggagacgacggagaaaggggtgacgatggagaagtcgggcccagagggctgccc
ggggaacctgggccgcgtggtctgctggggccgaaagggcccccgggccctcctggacct
cccggtgtgacgggtatggatggccaaccaggtctgaaaggaaacgtgggtcctcaggga
gagcccggccccccgggacagcagggtaatcccggtgcccagggtcttccaggcccccag
ggtgcgatcggtcctcctggagaaaagggtccgctgggtaaaccaggcctcccaggaatg
cccggcgctgacgggcccccggggcaccctggcaaagaaggccctccaggagagaaagga
ggccagggtccgcctggcccccagggcccaatcggctacccgggtcctcgaggtgtcaag
ggggcagatggcatccgtggtctgaagggcaccaagggcgagaagggtgaagacggcttt
cctgggtttaaaggagacatgggcatcaagggcgatcggggggagattggcccacctggt
cccagaggagaagatggccccgaaggcccaaagggtcgtggaggcccgaatggcgacccc
ggtccactgggccccccaggggagaaggggaaactcggagtcccaggattacccgggtac
ccgggaagacaagggccaaagggttctattggatttcctggatttcccggtgccaacggc
gagaagggtggcaggggcacacctgggaagcccggaccacggggacaacgaggcccaacg
ggtccgcggggtgaaagaggcccccggggcatcactgggaagcctggccccaagggcaac
tctggaggtgatggtccggccggccctccaggtgaacggggacccaacggaccccaagga
cccacggggtttcctggaccaaagggcccccctggtcctccgggcaaggatgggctgccg
ggacaccctggacagagaggcgagaccggtttccaaggcaagaccggccctccaggcccc
ccgggtgtggtcggcccgcagggtcccacgggagaaactggtccaatgggtgaacgtggc
caccctgggcccccgggcccccctggtgaacaggggctcccaggcgttgccggaaaagaa
gggacaaagggtgacccaggccccgctggcctccctgggaaagatggccctccaggatta
cgcggcttccccggggaccgagggcttcctggtccagtgggagcgcttggactgaaaggc
aacgaaggccccccgggcccaccaggccccgcggggtctccaggggagagaggtccggcc
ggtgctgctgggcccatcggaattccagggagacctgggccccagggacctccagggcca
gctggggagaaaggagctcctggcgagaaaggtccccaaggcccagccggccgagatggt
ctccagggtcctgtggggctccctggtccagcgggccctgtgggcccccctggagaagat
ggagataagggagagatcggggagccgggacagaagggcagcaagggggacaaaggcgag
cagggtccacctgggcctaccggtccccaaggccccatcggacagccaggcccctccgga
gccgacggagagccgggtcctcgtggccagcagggccttttcgggcagaaaggtgacgag
ggtccgagaggtttccctggcccccccgggcccgtggggctgcagggtctgccgggacct
ccaggagagaagggagagactggagacgtgggtcagatgggccctccaggtccccctggc
ccccgaggaccctctggagctccaggcgctgatgggccacaaggtcccccgggtggaata
ggcaatcctggtgcagtgggagagaagggtgagcctggtgaagctggtgaacctggcctt
cccggagaaggaggccccccgggacccaaaggagaaaggggagagaagggcgagtcaggc
ccttctggtgctgctggaccccctggacccaaaggccctcctggagacgacggtcccaaa
ggcagccccggcccggtcggttttcccggagatcccggtccccctggagagcccggccct
gcgggtcaagatggtccccctggtgacaaaggagacgatggcgagccagggcagacggga
tcgccgggccccactggtgaaccaggtccgtctgggcctccaggaaaaaggggtcccccc
ggccccgcgggccccgaaggcagacagggagagaaaggagccaagggagaagctggcttg
gaaggccctcctgggaagactggccccatcggcccccagggggcccctgggaagcctggg
cccgatggccttcgagggatccccggccctgtgggtgaacaaggtctcccgggatcccca
ggccctgacggtccccccggccccatgggtcccccaggactccccggcctcaaaggagat
tctggccccaagggggaaaagggtcatccaggcttgatcggactcatcggacctccgggt
gaacagggtgaaaagggtgaccgtggtctcccgggcccccagggctcctccggccccaag
ggagaacagggtatcactggtccttctggcccgatcggacccccgggccctcccggcttg
ccgggtccccctggtccaaaaggtgctaagggctcctcgggtccaactggtccgaagggt
gaggcaggccacccaggaccccctggcccgccgggccccccgggcgaggtcatccagcct
ctgccgatccaggcgtccaggacccggcggaacatcgacgccagccagatgctggacgac
ggggacggcgagaactacatggactacgcggacggcatggaggagatcttcggctcactc
aactccctgaagctggagatcgagcagatgaagcggccgttgggcacgcagcagaacccc
gcccgcacctgcaaggacctgcagctgtgccaccccgacttcccagacggtgaatactgg
gtggaccccaaccagggctgctcccgggattccttcaaagtgtactgcaacttcacggcg
ggaggggcgacctgcgtcttccccgacaagaagtctgagggggccagaatcacttcttgg
cccaaagaaaacccaggttcctggttcagtgaattcaagcgtggtaaactgctctcctat
gtggacgcggagggcaacccggtgggtgtggtccagatgaccttcctgcggctgctgagc
gcctctgcacaccagaacatcacctacaactgctaccagtcagtcgcctggcaggacgcc
gccacgggcagctacgacaaggccatgcgcttcctgggctccaacgacgaggagatgtcc
tttgacaacagcccctacatccgcgccctggtggacggctgtgctacaaggaaagggtat
cagaagaccgttctggaaatcgacactcccaaggtggagcaagtgcccattgtggacatc
atgttcaatgacttcggtgaagcatcacagaaattcggattcgaagtggggccggcttgc
ttcctgggctag
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integrated database retrieval system
