KEGG   Equus caballus (horse): 100069294
Entry
100069294         CDS       T01058                                 
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
ecb  Equus caballus (horse)
Pathway
ecb03013  Nucleocytoplasmic transport
ecb03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ecb00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100069294 (UPF3A)
   03015 mRNA surveillance pathway
    100069294 (UPF3A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecb03019]
    100069294 (UPF3A)
Messenger RNA biogenesis [BR:ecb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100069294 (UPF3A)
   mRNA cycle factors
    P-body specific factors
     100069294 (UPF3A)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 100069294
NCBI-ProteinID: XP_023477680
Ensembl: ENSECAG00000017141
VGNC: 24806
LinkDB
Position
17:80656556..80675637
AA seq 469 aa
MRSEKEAARGLGAALAARGPSGREKPSAMEVQFRRESPPTTSSGCGGGADKPREEKRTVL
SKVVIRRLPPSLTKEQLEEQLHPLPAHDYFEFFTADLSLFPHLYSRAYINFRNPEDILLF
RDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDAEYKKFLEAYCVE
EEKAAASPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKK
RLREEEKRKRREEERCKRKEADKQERAAEREVRIKLLKKPEKGDESTTEKPKERGEEVDV
GDARREPCPSCAVVRPRPPESLWEEPRDKSQNDSDKEQRDVERRFREKELETQRYHLDES
RKHRAHYEFEPKWGKGFTPDRGKKGSQDDGVPMEATERPAGEQRSAGGPMPRKERMGNKD
RPSLQLYQPGARSRARECGGRPSEEGRAGRRGEAEDSAGAGAKRSEEAE
NT seq 1410 nt   +upstreamnt  +downstreamnt
atgcgctcggagaaggaggcggccagaggcctcggggcggctcttgctgcgcggggcccg
agcgggcgggagaagccgtcggccatggaagtccagttccgccgggagtcaccgcctacc
acgtcctccggctgtgggggtggcgcagacaaacctcgcgaggagaagaggacggtcctg
agcaaggtggtcatccgccggcttcctcccagcctcacgaaggagcagctggaagaacag
ctgcacccactgcctgcgcacgactactttgagttctttactgccgatctcagtcttttt
cctcatctctactcaagagcatacattaattttagaaatcctgaggacatccttcttttt
agagatcgttttgatggatatatcttcattgacagtaaaggcctagaatatcctgcagtg
gtagagtttgctccattccagaagatcgccaaaaagaagctaaagaagaaagatgccaaa
accggaagcattgaagacgatgcagaatacaagaagttcttagaagcttactgtgtggag
gaggagaaagccgctgccagtcctgagactcttctgggggacatagaggcaaagacaaga
gaacttattgccagaagaaccacgcctcttttggaatatattaagaacaggaagttagag
aagcagagaattcgagaggagaagcgggaagaacgaaggaggagggagctggaaaagaaa
cgcctgcgggaagaagaaaagagaaaaagaagagaggaggaaagatgtaagagaaaagag
gctgacaagcaagagcgagcggcggagagagaagtgaggattaagctgcttaagaaacca
gaaaagggagacgaatcaaccactgagaaaccaaaagaaagaggagaagaagtcgatgtt
ggagatgcaagacgggagccctgtcccagctgtgccgtcgtgaggcccaggcccccagag
agcttgtgggaggagcccagggacaagtcacaaaatgacagtgataaagagcagagggat
gtggagagaagatttcgagaaaaagaacttgaaacacaaagataccacttggatgagagc
agaaagcacagagctcactatgagtttgagccgaaatgggggaaaggattcaccccagac
agagggaagaaagggagccaggatgacggggtccctatggaggccacagagagaccagcg
ggggagcagaggagcgcgggcggccccatgcccaggaaggagcgcatgggaaacaaggac
cggccatccttgcagctctaccagccaggcgctcgcagccgagcacgtgaatgtggcgga
agaccctctgaggagggccgtgccgggaggaggggcgaggccgaggattccgcaggggct
ggtgccaagaggagcgaagaggcagagtga

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