Escherichia coli O6 K2 H1 CFT073 (UPEC): c3916
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Entry
c3916 CDS
T00106
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecc
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
ecc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
c3916 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecc03019
]
c3916 (deaD)
03009 Ribosome biogenesis [BR:
ecc03009
]
c3916 (deaD)
Enzymes [BR:
ecc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
c3916 (deaD)
Messenger RNA biogenesis [BR:
ecc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
c3916 (deaD)
Ribosome biogenesis [BR:
ecc03009
]
Prokaryotic type
rRNA helicases
c3916 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AAN82357
UniProt:
P0A9P7
LinkDB
All DBs
Position
complement(3739604..3741559)
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AA seq
651 aa
AA seq
DB search
MLINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIP
HLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFS
KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA
DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR
AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS
DLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR
GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY
IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGF
GGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
ttgctgatcaatttcatgatgagttatgtagactggccgccattaattttgaggcacacg
tactacatggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatcctt
gaagcccttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattcca
catctgctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgca
gcattctctctacctctgctgcagaatcttgatcctgagctgaaagcaccacagattctg
gtgctggcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctct
aaacacatgcgcggcgtaaacgtggttgccctgtacggcggccaacgttatgacgtgcaa
ttacgcgccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggac
cacctgaaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagct
gacgaaatgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccg
gaaggtcatcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacc
cgccgctttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcct
gacatcagccagagctactggactgtctggggtatgcgtaaaaacgaagcactggtacgt
ttcctggaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgact
ctggaagtggcagaagctcttgagcgtaacggctacaacagcgccgcgctgaacggtgac
atgaaccaggcgctgcgtgagcagacactggaacgcctgaaagatggtcgtctggacatc
ctgattgcgaccgacgttgcagcccgtggcctggacgttgagcgtatcagcctggtggtt
aactacgatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgt
gcaggtcgtgctggtcgtgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgt
aacattgaacgcaccatgaagctgaccattccggaagtagaactgccgaacgcagaactg
ctgggcaaacgtcgtctggaaaaatttgccgctaaagtacagcagcagctggaaagcagc
gatctggatcaataccgtgcactgctgagcaaaattcagccgactgccgaaggtgaagag
ctggatctcgaaactctggcagccgcactactgaaaatggcacagggtgaacgtactctg
attgttccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgt
ggtccgcgcgatcgtaacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgc
gaacgtcgtgatgttggcgatatgcagttgtaccgtattgaagtgggccgcgatgatggt
gttgaagttcgtcatatcgttggtgcgattgctaacgaaggcgacatcagcagccgttac
atcggtaacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccg
ggtgaagtgctgcaacactttacgcgtactcgcattctcaacaagccgatgaacatgcag
ttactgggcgatgcacagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttc
ggtggcgaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaaggggggcgt
ggtgatgggcgtcgttttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgac
tctaccggtcgtcgtcgtttcggtggtgatgcgtaa
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