Escherichia coli K-12 DH10B: ECDH10B_4013
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Entry
ECDH10B_4013 CDS
T00666
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ecd
Escherichia coli K-12 DH10B
Pathway
ecd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECDH10B_4013 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecd03019
]
ECDH10B_4013 (recQ)
03400 DNA repair and recombination proteins [BR:
ecd03400
]
ECDH10B_4013 (recQ)
Enzymes [BR:
ecd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECDH10B_4013 (recQ)
Messenger RNA biogenesis [BR:
ecd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECDH10B_4013 (recQ)
DNA repair and recombination proteins [BR:
ecd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ECDH10B_4013 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACB04845
LinkDB
All DBs
Position
4102807..4104636
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL
TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaagaaacc
tttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctttccggc
cgcgattgcctcgtcgtcatgcccactggtggcggaaaatccctttgctatcaaatccct
gccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatgaaagat
caggtggatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacgcaaacc
cgcgaacagcaacttgaagtgatgacaggctgccgcaccgggcaaattcgtctgctttat
atcgccccggaacgcctgatgctggataactttcttgagcatctggcgcactggaatccg
gtgttattagccgttgatgaagcgcactgtatctcccaatggggccacgatttccgcccg
gaatatgccgcgctcggtcagttgcgccagcggttcccgacgctgccgtttatggcgctg
accgccacagccgacgacaccacgcgccaggatatcgtgcgcctgctggggctgaacgat
ccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatggagaag
ttcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtcaggcatt
atctactgcaacagccgcgcgaaagtagaagacaccgctgcgcgcctgcaaagcaaggga
attagcgcggcggcctatcatgccgggctggaaaataatgttcgcgccgatgtgcaggaa
aaattccagcgcgatgacctgcaaattgtggtggcgacggtggcgttcggcatgggcatc
aataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaatcctat
tatcaggaaaccggacgcgccgggcgtgatggcctgcccgcggaagcgatgctgttttac
gatccggctgatatggcgtggctgcgccgttgtctggaagagaagccgcaggggcagttg
caggatatcgagcgccacaaactcaatgcgatgggcgcgtttgccgaagcgcaaacttgc
cgtcgtctggtattgctgaactattttggcgaagggcgtcaggagccgtgcgggaactgc
gatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagattgccctt
tccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtgattcgt
ggtgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctatggcatg
ggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcacctcggc
ctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggccgcgcgcccg
gtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctcaaaccg
aaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaattacgc
aaactgcgtaaatcgatagccgatgaaagtaatgtcccgccgtacgtggtgtttaacgac
gcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctcagcgtt
aacggcgttgggatgcgcaagctggaacgctttggcaaaccgtttatggcgctgattcgt
gcgcatgttgatggcgatgacgaagagtag
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