Escherichia coli SMS-3-5 (environmental): EcSMS35_2195
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Entry
EcSMS35_2195 CDS
T00672
Name
(GenBank) putative peptidoglycan binding domain
KO
K21470
L,D-transpeptidase YcbB
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecm01002
]
EcSMS35_2195
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ecm01011
]
EcSMS35_2195
Peptidases and inhibitors [BR:
ecm01002
]
Cysteine peptidases
Family C82
EcSMS35_2195
Peptidoglycan biosynthesis and degradation proteins [BR:
ecm01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
EcSMS35_2195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
DUF4389
Motif
Other DBs
NCBI-ProteinID:
ACB19633
UniProt:
B1LJT8
LinkDB
All DBs
Position
complement(2204363..2206210)
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AA seq
615 aa
AA seq
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MLLNMMCGRRLSAISLCVAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIM
AGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQL
AEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKP
YALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLSDTKPWPQLTGK
ATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMD
KQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA
LNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVV
VNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLP
FRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANM
LLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA
RSSSQIVSKAEQLIR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaatatgatgtgtggtcgtcggctgtcggcaatcagtttgtgcgtggccgta
acattcgctccactgttcaatgcgcaggccgatgagcctgaagtaatccctggcgacagc
ccggtggctgtcagtgaacagggcgaggcactgccgcaggcgcaagccacggcaattatg
gcggggatccagccattgcctgaaggtgcggcagaaaaagcccgcacgcaaatcgaatct
caattacccgcaggttataagccggtttatcttaaccagcttcaactgttgtatgccgca
cgcgatatgcaacccatgtgggaaaaccgtgatgctgttaaagccttccagcaacagctg
gcagaggtggcgattgccggtttccagccgcagtttaataaatgggtagagttactgacc
gatcctggtgttaacgggatggcacgcgacgtcgtgctctctgatgcgatgatgggctat
ctccatttcattgcaaatattccggtcaaaggcactcgctggctatatagcagtaaacct
tatgcgctttcaacgccgccgctttcggtgattaaccaatggcagctggcgctggataaa
ggtcaattgccgacgtttgttgcaggtctggcaccgcagcatccgcaatatgcagcgatg
catgaatcgttactggccttactcagtgacaccaaaccgtggccccaactgaccggcaaa
gcaacgttgcgcccagggcagtggagtaacgacgtaccggcgttgcgcgaaatattgcaa
cgcacaggcatgctggacggggggccgaaaattactctacctggcgatgacacgccaact
gacgcggtagtcagcccatccgctgttactgttgaaacagcagaaactaagccgatggac
aagcaaacgacgtctcgtagtaaacctgcgcctgccgttcgtgccgcctacgataatgaa
ctggtggaagccgttaaacgttttcaggcatggcaaggattgggagcagatggcgctatt
ggcccggcaacgcgtgactggttaaacgtaacgcccgcccagcgtgctggcgtgttggca
ctcaacatccagcgattgcgcttgctgccaacagagctttctaccgggatcatggttaac
attccggcctattcgctggtctactatcagaacggcaatcaggtgctggattcgcgagtc
attgtcggtcgccccgatcgcaaaacgccgatgatgagcagtgcacttaacaacgtagtg
gtaaacccgccgtggaacgtaccaccaactctggcacgcaaagatattctgccgaaagtg
cgcaacgatccgggatatctcgaaagccatggctatacggtgatgcgcggctggaacagc
agagaagcgattgacccatggcaggttgactggtctacaatcacggcctcgaatttaccg
ttccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatg
ccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaaacgtgat
acacgcgcattgagctcaggctgtgtgcgagtgaataaagcttccgatctggcgaatatg
ctgttgcaggatgcaggatggaatgacaaacgtatttctgatgcgctgaagcagggcgat
acgcgttacgtcaatattcggcagtcgattccggtgaatctctactacctgacggccttt
gttggtgcagatggtcgtacccagtatcgtacagatatttacaattatgatctgcctgcg
cgatccagctcgcaaatcgtatcgaaagcggaacaattaatcaggtaa
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