Escherichia coli SMS-3-5 (environmental): EcSMS35_4867
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Entry
EcSMS35_4867 CDS
T00672
Name
(GenBank) putative regulatory protein IbeR
KO
K05880
transcriptional activator for dhaKLM operon
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecm03000
]
EcSMS35_4867
Transcription factors [BR:
ecm03000
]
Prokaryotic type
Other transcription factors
Others
EcSMS35_4867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
PAS
AAA_2
GAF
Mg_chelatase
PAS_9
PAS_4
PAS_8
AAA_16
Bac_DnaA
AAA_22
TIP49
Motif
Other DBs
NCBI-ProteinID:
ACB18057
UniProt:
B1LDS6
LinkDB
All DBs
Position
4977307..4979256
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AA seq
649 aa
AA seq
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MDIIIMNKESYHNDLKNKWKMFVKHGWVATNSTNHVMLRSWQKCLKHCDPRHWNTPVKAS
GQTLQTIFSRNEEFIRISQRVVEDHFTLAGDDRLAFLIIDPHGWVLSLNAAGDYSSQLRE
LGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSEQLHCYAMSAAPVIDYYGNIHG
YIVCIIETTAELVKLKTSYSCATEIANYIYIENEQKLINKVLCQHNAVIECMDDGFICWN
SHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPILNEAITQRNKLSQKQIVLECRGE
FIELMVTLRPLSDGSFLLFLHPLDKIRKIAQQQISTNANFTFDSLHAASGGMKQVLLIAR
RAIKSISPILINGEEGVGKLSLAMAIHNESEQRDGPFISVDCQMLSPENILHELLGSDVG
PSPSKFELAHNGTLYLDKVEYLSGEVQSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSS
SLREYVQQGAFSRQLYYEISMNEIEIPPLRKRREDLKQMIDDIIDKYQERTRKKMTITPD
ANSVLLEYRWPGNISEFKNRMEKVFINCNRLVLGLENIPLDIRQNNSSGDDDIPHLTSLA
ELEMQAIEHTCRVCEWNLTKAAEVLKIGRTTLWRKLKIYNLYPNVEHAD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggatattattataatgaataaagagtcgtatcataatgatctaaaaaataaatggaaa
atgtttgttaagcatggttgggtcgcgacaaattcgactaatcatgtgatgctgaggtca
tggcaaaaatgtctcaagcattgtgaccctcgccactggaacacgcctgtcaaagcttcc
gggcaaacattgcagacgattttttctcgtaacgaagagtttattagaatttcacaaaga
gttgttgaagaccatttcaccctggctggtgacgaccggttggcatttttgatcattgac
ccacacggctgggttctatcgttgaatgcagcaggcgattattccagtcaattgcgagag
ttaggaattgaatctggtatgtcatgggccgaagatggcattggaaccaatgtatatagt
ctttgtcgggaaacaaatttatatacacaactggaaggagcagaacattttagtgaacag
ctacattgttatgcgatgagcgctgctccggtcattgattattatggtaatatccatgga
tacattgtatgtataattgaaactaccgccgagcttgttaaattaaaaacatcatattca
tgtgcaacagaaatcgctaattatatctatattgagaatgaacaaaagttaataaacaaa
gtactttgccagcataatgctgtgattgaatgcatggatgacggttttatttgttggaat
agtcattctttaattacgatggttaattctcaagcacaaacactactgaatattgataaa
gaaagtttaattggtcagaacatccgaaaaggattcgtatttccgccgattttgaatgag
gcaattacacaacggaacaaactatcgcaaaagcaaattgtcctcgaatgccgtggcgaa
tttattgaacttatggttacccttcgcccgttaagcgatggttcgtttttgctttttctt
catccattagacaaaatcaggaaaatagcccaacagcaaataagcactaatgcaaatttt
acctttgacagtttacatgcggcttcaggtggtatgaagcaggtattacttatcgctcgc
cgggcaattaaatccatctctccgattttgatcaatggcgaagaaggtgtgggaaaattg
agtttggcgatggcaatacataatgagagcgagcaacgtgatgggccatttatttctgta
gattgtcagatgctatcaccagaaaatatcttacacgaacttcttggctctgatgttggt
ccttcgccatcgaaatttgaactggctcataatggcaccttatatctggataaagtcgaa
tatctatcaggggaagttcagagtgttttattgaaagtattgaaaacggggcttgttact
cgctcagacagtcatcgtttgatccccgtacgctttcgcctgattacatgtaccagtagt
tctttacgtgagtacgtgcaacaaggggcttttagccgacagctatattatgagatctcc
atgaatgaaattgaaattccgccattgcgcaaacgtcgtgaagatctcaagcaaatgatt
gacgatattattgataagtatcaggagcgcactcgaaaaaaaatgacaatcacgcctgac
gcaaattcagttctgcttgagtaccgttggcctggaaacatctccgagttcaaaaatcga
atggagaaggtatttattaactgcaatcggcttgtcctcggattagagaatattcctctg
gatatccgacaaaataacagtagtggcgacgatgatatccctcatcttacttcactggca
gaattggagatgcaagctattgagcatacatgtcgtgtctgcgaatggaatctaactaaa
gcagctgaagtattaaaaattggtcgtacaacattatggcgcaagcttaaaatctataat
ctctatccaaatgttgagcatgcagattga
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