KEGG   Escherichia coli APEC O78 (APEC): APECO78_20895
Entry
APECO78_20895     CDS       T02445                                 
Name
(GenBank) transcriptional regulatory protein RtcR
  KO
K14414  transcriptional regulatory protein RtcR
Organism
ecoa  Escherichia coli APEC O78 (APEC)
Brite
KEGG Orthology (KO) [BR:ecoa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ecoa03000]
    APECO78_20895
Transcription factors [BR:ecoa03000]
 Prokaryotic type
  Other transcription factors
   Others
    APECO78_20895
SSDB
Motif
Pfam: RtcR Sigma54_activat Sigma54_activ_2 AAA_5 AAA Mg_chelatase NACHT AAA_16 AAA_22 AAA_30 AAA_7 AAA_19 AAA_2 AAA_14 AAA_33 T2SSE ATPase_2 ResIII TsaE MCM NB-ARC
Other DBs
NCBI-ProteinID: AGC88896
LinkDB
Position
4319682..4321280
AA seq 532 aa
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK
RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAL
CRQAKSLSAAGRLLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
NT seq 1599 nt   +upstreamnt  +downstreamnt
atgcgtaaaacagtggcttttggctttgtcggtaccgtactggattatgccgggcgcggc
agtcagcgctggtcaaaatggcgtccgacactctgtttatgccagcaagaatcgttggtc
atcgatcgactggaattgttgcacgacgcccgctcgcgctcgctatttgaaacgcttaaa
cgcgatatcgccagcgtttcgccagaaacagaagtggtgagcgttgagattgaactgcat
aacccgtgggatttcgaagaggtctacgcctgcctgcatgatttcgcccgtggttacgag
tttcagccagaaaaagaagactatttaattcacatcaccaccggtacccacgtcgcgcag
atttgctggtttctgctggcagaagcgcgttacctgcccgcccggctgatacaatcttca
cctccgcgcaaaaaagaacagccgcgcggcgcaggtgaagtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaacgcttgat
tttcttaagtccggcattgccacgcgtaacccccacttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcgccgattctgcttaacggtccaaccggcgcgggc
aagtcatttctggcgcgacgcatcttcgagttaaaacaggcgcggcatcagtttagcggc
gcgtttgtggaagtgaactgcgccaccctgcgcggcgataccgccatgtcgacgctgttt
ggtcatgtaaaaggcgcgtttaccggggcgcgggaatctcgtgaaggtttattacgcagc
gccaacggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaagca
atgctgctaaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaa
ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggt
ctacgccagcgccaggaagatattgaaccgaaccttgattatgaagtggagcgccacgcc
acactcactggcgacagcgtgcgttttaacaccgaagcgcggcgcgcctggttggctttt
gcgacctctccccaggcaacatggcgcggtaactttcgcgaactttctgccagcgtcacg
cggatggccacctttgccactagcggacgcatcactctggacgtggttgaagatgagata
aaccgtctgcgctataactggcaggagagccgcccctccgcgcttacggcgttgctgggc
gcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacacgtgatagctctc
tgtcgccaggcaaagtcgctttccgctgccggacgcctgctttttgatgtttcgcgccag
ggcaaagccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctg
acgtgggaagccgtgcaggatcagcacagctccagttga

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