KEGG   Escherichia coli O145 H28 RM13514 (EHEC): ECRM13514_4370
Entry
ECRM13514_4370    CDS       T03010                                 
Symbol
rtcB
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ecoo  Escherichia coli O145:H28 RM13514 (EHEC)
Brite
KEGG Orthology (KO) [BR:ecoo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ecoo03016]
    ECRM13514_4370 (rtcB)
Enzymes [BR:ecoo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     ECRM13514_4370 (rtcB)
Transfer RNA biogenesis [BR:ecoo03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    ECRM13514_4370 (rtcB)
 Prokaryotic type
   tRNA splicing ligases
    ECRM13514_4370 (rtcB)
SSDB
Motif
Pfam: RtcB DUF4514
Other DBs
NCBI-ProteinID: AHG11021
LinkDB
Position
complement(4246467..4247693)
AA seq 408 aa
MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDGSDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQDQLETLPSRDLAYFMEGTEYFDDYLRAVAWAQ
LFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq 1227 nt   +upstreamnt  +downstreamnt
atgaattacgaattactgaccactgaaaatgccccggtaaaaatgtggaccaaaggcgtg
ccggtagaagccgatgcgcgtcagcaacttattaatacggcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacacctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcggtgggcgtggatattggctgtggaatg
aacgcgctgcgtaccgcgttaacggcggctgacctgccggaaaacctggcggagctgcgt
caggcgattgaaactgcggtgccgcacgggcgtactaccggacgttgtaaacgtgataaa
ggtgcatgggaaaacccgcctgttaacgtcgatgcgaaatgggctgagctggaggccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaacactaacaactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatctgccttgatgggtcggaccaggtg
tggattatgctgcactccggttcacgcggaattggtaatgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaccaacttgagacgttgccgtcgcgtgatctggcg
tactttatggaaggtacggaatactttgatgattacctaagagccgtggcctgggcgcag
ctttttgccagccttaaccgcgatgcgatgatggaaaacgtggtaacggcgttgcagagc
attacgcagaaaacggtcagacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttggtgaagagatctacgtgacgcgtaaaggc
gcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggtgcgaaaagc
tttatcgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagcgtggaagatcaaattcgtgct
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctataccctg
cgtcaggtggtgtgcgtaaaaggataa

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