Escherichia coli O6 K15 H31 536 (UPEC): ECP_1106
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Entry
ECP_1106 CDS
T00373
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecp
Escherichia coli O6:K15:H31 536 (UPEC)
Pathway
ecp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECP_1106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecp03400
]
ECP_1106
Enzymes [BR:
ecp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECP_1106
DNA repair and recombination proteins [BR:
ecp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECP_1106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABG69119
UniProt:
A0A454A358
LinkDB
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Position
complement(1161416..1164910)
Genome browser
AA seq
1164 aa
AA seq
DB search
MPSYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG
VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT
RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEFPTDKAAI
ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
TGDLENSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL
PTKAANANLGFQKLPDLAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLAR
IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRA
INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS
SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK
HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL
AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI
DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQK
AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV
ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA
RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD
LSERKTRIEWVRQFMRELEENAIA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgccctcatatgttgaggcatatcctaacgagaatctgacaaccgttatgcctgaacaa
tatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggcgagttaaccggc
gctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgccggtccggtggtactc
attgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagccagttcaccgat
cagatggtgatgaatctggcggactgggaaaccctcccttacgacagtttttcgcctcat
caggacattatctcctcgcgtctttccaccctttaccagctaccgaccatgcagcgtggc
gtactgattgttccggtgaatacgcttatgcagcgcgtttgcccgcacagctttctccac
ggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgcattacgaacccaa
ctggacagcgccggttatcgccatgttgaccaggtgatggagcacggcgaatacgccacg
cgcggcgcgttgctggatctcttcccgatggggagtgagctgccttatcgtcttgatttc
tttgatgatgaaatcgacagcctgcgggtgtttgacgtcgatagccagcgcacgctggag
gaagtagaagagatcaatctgcttcccgcgcacgaatttcctaccgataaagcggcaatt
gaactgttccgcagccagtggcgtgataccttcgaagtgaagcgcgacccggaacatatt
tatcagcaagtgagtaaaggcacattacctgccgggatcgagtactggcagccgctattc
ttcagcgaaccgctgccgccactgttcagttatttccctgccaatacgctgttggtgaat
actggcgatctggaaaacagtgccgaacgtttccaggctgacacgctggcgcgttttgag
aatcgcggcgtcgacccaatgcgcccactgttgccaccacaatcgctctggctgcgggtg
gatgagctcttctcagagctgaaaaactggccccgtgtgcagctaaaaactgaacattta
ccgacaaaagcagcgaatgccaatttaggtttccagaaactgccagacctggccattcag
gcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagtctttcgacggtccg
gtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaactgctcgcgcga
attaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgaccgtgggcgttat
ttgatgattggcgctgccgaacatggttttgtcgatacggtacgtaatctggcgctgatt
tgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggattctcgccgcgcc
atcaaccccgatacactgatccgtaaccttgcggagctgcatattggtcagccggtggtc
catctggagcacggtgtcggtcgttatgcaggaatgaccacgctcgaagctggcggcatt
actggcgagtacctgatgctcacctatgccaacgacgccaaactgtatgttccggtgtca
tcactgcatctgattagccgttacgcaggtggcgcggaagaaaacgccccgctgcataaa
cttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaagtgcgtgatgtg
gcagcagaattgctggatatctacgcgcaacgcgccgccaaagagggcttcgcgtttaaa
cacgatcgtgagcagtatcagttgttctgcgacagcttcccgtttgaaaccacgccggat
caggcacaggccattaatgcggtacttagcgacatgtgtcagccgctggcaatggatcgt
ctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgcgccgctttcctg
gcagtagataaccacaagcaggtggcggtgctggtgcctaccacccttctcgcgcagcag
cattacgacaacttccgcgaccgtttcgccaactggccggtacgtatcgaaatgatctcc
cgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcggaagggaaaatc
gatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagtttaaagatttaggc
ctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagagcgcattaaagcg
atgcgcgcgaacgtggatattctgacgcttactgcaacgccgatcccacgtacgctgaat
atggcaatgagcggaatgcgtgacctgtcgattatcgccacgccgcccgcccgtcgtctg
gcagttaaaacctttgtccgtgagtatgacagcctggtggtccgggaggcgatcctgcgt
gaaattttgcgcggaggacaggtttattatctctacaatgatgtggaaaacattcagaaa
gccgccgaacggctggcagaactggtgccagaagcgcggatcgccatcggtcacggacag
atgcgtgagcgcgaactggaacgggtgatgaatgatttccatcatcaacgtttcaacgtg
ctggtttgtaccaccattatcgaaaccgggatcgacatcccgacagccaacaccattatc
attgaacgcgcggatcacttcggtctggcgcagctgcaccagttacgcggtcgcgtcgga
cgttcgcatcatcaggcatatgcatggttgctgacaccgcatccaaaagcgatgactacc
gatgcacaaaaacgtcttgaagcgattgcctcgctggaagatctcggggcaggttttgcg
ctggcaacgcacgatctggagattcgcggcgcgggtgaactgcttggcgaagaacaaagc
ggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaaaacgccgtcgat
gcactgaaagccggacgcgagccgtcgctggaagatctcaccagccagcaaacagaagtc
gagctgcggatgccgtcgctattgccagatgatttcatccctgacgtgaacacgcgtctg
tcgttctacaaacgtattgccagcgccaaaactgaaaacgaactggaagagatcaaagtc
gagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctgctggatattgcc
cgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggtaatgagaaaggc
ggcgtgatcgaatttgccgagaagaatcacgttaatccggcctggttgattggtttgctg
caaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaagtttattcaggat
ttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgtgaactggaagag
aacgcgatcgcttga
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