Duffyella gerundensis: EM595_3249
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Entry
EM595_3249 CDS
T04258
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ege
Duffyella gerundensis
Pathway
ege03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EM595_3249 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ege03021
]
EM595_3249 (rpoC)
03400 DNA repair and recombination proteins [BR:
ege03400
]
EM595_3249 (rpoC)
Enzymes [BR:
ege01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EM595_3249 (rpoC)
Transcription machinery [BR:
ege03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EM595_3249 (rpoC)
DNA repair and recombination proteins [BR:
ege03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EM595_3249 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CUU25480
UniProt:
A0A0U5L827
LinkDB
All DBs
Position
1:complement(3514281..3518501)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEHEKNEQEEWVAKTSIIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKVEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTELVINRDGVEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLHEHMCDLLEENSVDSVKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGAAMAKGDGEQVAAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGSDMPAQYFLPGKAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPIDGSEAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIVSSGSTEFLDGEQAEFSRIKIANRDLEANGKVGATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERMRRRLHGEAPA
APQVTADEASASLAELLNAGLGGKDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctaaaagcgcaaactaaaactgaagagtttgatgcgatc
aaaattgctctggcttcgccagatatgatccgttcatggtctttcggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaaacctgagcgtgacggtctgttctgcgcccgt
atttttgggccagtcaaagactatgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggcgtgatttgtgagaagtgtggcgttgaagttacgcagactaaagtgcgccgtgag
cgcatgggtcatatcgaactggcatcaccaacggctcacatttggttcctgaaatcactg
ccatcacgtatcggcctgctgttagacatgccgctgcgcgatatcgagcgcgtgctctat
tttgaatcttatgtcgtgatcgaaggcggcatgaccaacctcgaaaagcgccagatcctg
actgaagagcagtatctggacgcgctggaagagtttggcgacgaattcgatgcgaaaatg
ggtgcggaagcgatccaggccctgttgaaaaacatggatctggagcaagagtgcgagcag
ctgcgcgaagagctgaacgaaactaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gtgctgccggtactgccaccggatctgcgtccgttggtaccgctggacggcggccgtttt
gcgacttccgatcttaacgacctttatcgtcgtgtgatcaaccgtaacaaccgcctgaag
cgcctactggatctggctgcgccagatatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtggatgcattgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaagtcactggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactccggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgccgaaaaaaatggcactcgaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctcgccactaccatcaaagctgcgaagaaaatg
gttgagcgcgaggaagcggttgtctgggatatccttgacgaagtgatccgcgagcacccg
gttctgctgaaccgtgcgccaacgctgcaccgtctgggtattcaggcttttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcatccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagca
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccggcccgaaagaagctgagcgtgtttaccgcgctggc
ctggcttctctgcacgctcgcgttaaggtgcgtattaccgaacacgagaagaacgagcag
gaagagtgggttgctaaaaccagcatcatcgataccacgattggccgtgccattctgtgg
atgatcgtgcctaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttattttt
gctgaccagaccatgtacaccggtttcgcttatgcggcccgttcaggtgcgtctgttggt
atcgatgacatggttatcccggccaaaaaagtagaaatcatcagcgaagcggaagcggaa
gttgctgagattcaggagcagttccagtcgggtctggttaccgctggcgaacgctataac
aaagttatcgatatctgggctgccgctaacgaacgcgtagcgaaagcgatgatggaaaac
ctctctactgaactggtcatcaaccgtgacggtgtagaagagcgccaggtttccttcaac
agtatctttatgatggccgactccggtgcgcgtggttctgctgcgcagattcgtcagctg
gccggtatgcgtggtctgatggcgaaaccagatggttccatcatcgagacgccaattacc
gcaaacttccgtgaaggtttgaacgtacttcagtacttcatctcgacgcacggtgcgcgt
aaaggccttgcggataccgcactaaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgttgcacaggatctggttgttaccgaagacgactgtggtacccacgaaggtatc
ctgatgacgccggtaatcgaagggggtgacgttaaagaaccactgcgcgagcgcgtactg
ggtcgtgttaccgctgaagatgtgctgaaacccggcaccgctgatattctggttccacgc
aacacgctgctgcatgagcacatgtgtgacctgctggaagagaactcagtggacagcgtg
aaagtacgctccgtagtaggttgtgaaaccgactttggtgtgtgtgctcactgctatggt
cgcgatctggcacgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgctgca
cagtccatcggtgagccgggtacgcagctgaccatgcgtacgttccacattggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtaccatcaagctg
accaacgccaagtcggtaacgaactcggccggtaagctggtgatcacctcgcgtaacgtc
gaactgaaaatgatcgatgaatttggccgtactaaagagagctataaagttccttacggt
gcagccatggcgaaaggtgatggtgaacaagttgccgcgggcgaaaccgttgcaaactgg
gatccgcataccatgccggttatcaccgaagtgagcggtttcatccgtttcactgacatg
atcgacggtcaaaccattacgcgtcagactgatgaattaaccggtctgtcatcgctggtg
gtgctggacagtgctgaacgtaccgcaggtggtaaagatctgcgtcctgcactgaaaatc
gttgatgccaacggtaacgatgtattgatcccaggcagcgatatgcctgctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggtgtgaaaatcagctccggtgatacg
ctggcgcgtgtgccacaggaatctggcggtaccaaagatattaccggtggtctgccacgc
gttgccgatctgttcgaagcgcgtcgtccgaaagagcctgctatccttgctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaaacgtcgtctggttatcaccccgatt
gacggcagcgaagcttacgaagagatgattccaaaatggcgtcagctcaacgtgtttgaa
ggtgagcgtgtggaacgcggtgacgtggtttccgacggtccggaatctccgcatgacatt
ctgcgtctgcgtggcgtccatgctgtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgtacgtcagatg
ctgcgtaaagcgaccatcgtgagctcaggcagcaccgagttcctcgacggtgagcaggcg
gagttctctcgcatcaagattgctaaccgcgatctggaagcgaacggcaaagtcggcgcg
acctttgcacgcgatctgcttggtattaccaaagcgtcgctggcaaccgaatcgttcatc
tctgcagcatcgttccaggagaccacgcgtgtcctgaccgaagctgctgtagcaggcaag
cgcgatgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcttaccatcaggagcgcatgcgtcgtcgtttgcatggcgaagcacctgct
gcgccgcaggttactgctgacgaagcatctgccagcctggcagagctgctgaacgcaggc
cttggcggtaaagacgattaa
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integrated database retrieval system
