KEGG   Egretta garzetta (little egret): 104134978
Entry
104134978         CDS       T05152                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
  KO
K13126  polyadenylate-binding protein
Organism
egz  Egretta garzetta (little egret)
Pathway
egz03015  mRNA surveillance pathway
egz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104134978 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104134978 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egz03019]
    104134978 (PABPC4)
   03041 Spliceosome [BR:egz03041]
    104134978 (PABPC4)
Messenger RNA biogenesis [BR:egz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104134978 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     104134978 (PABPC4)
Spliceosome [BR:egz03041]
 Complex C
  Other components
   Complex C specific factors
    104134978 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 NOP5NT
Other DBs
NCBI-GeneID: 104134978
NCBI-ProteinID: XP_009646876
LinkDB
Position
Unknown
AA seq 601 aa
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPAA
AQRVGVGTAAQNLAPRPPAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAM
HPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKEAAQKVGVVAAT
S
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgaacacagctgccagcagttacccgatggcatcgctgtacgtgggtgacctgcacccc
gatgtcaccgaggccatgctctatgagaagttcagccccgctgggcccgttctctcgatt
cgggtctgcagagatatgatcacccgccggtccctcgggtacgcctacgtcaacttccag
cagccagcagatgctgagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctaaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagcgggag
gctgagttgggagccaaggcaaaggaattcaccaatgtttatattaaaaactttggggac
gacatggatgatgaaagactaaaggagctcttcagcaaatatggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaatggaaaggatatcaatgggaaaatg
gtatttgtaggccgagcacagaagaaggttgagcgccaggcagagctgaaacggaagttt
gaacagctaaaacaagagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acaagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagctacaaaagctgtgacagagatgaatgggagaattgtgggctca
aagccgttgtatgttgcacttgcacaaaggaaagaagagcgaaaggcccatctaactaat
cagtacatgcagcgcattgctgggatgagagccctgcctgccaacacaattattaatcag
ttccagcctgctgctgggggatatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacctaatcaaatgacgcagatgagacccaacccgcgctggcagcaaggg
ggaagacctcaaggcttccagggaatgccaaatgccatgcgccagtctggaccacggcca
gcactgcgccatctggcccctgccggcaatgctccggcctctcgtggcctccctgccgct
gcccagcgagttggcgttggcaccgcagcgcagaatttagctcctcgtccgcctgcacct
cagcctgcagtacacgtgcagggacaggaaccgctaacggcctccatgctggctgctgcc
cctccccaggagcagaagcagatgctgggagaacgtttgttccctctgattcaagctatg
caccccagccttgcggggaagatcacaggaatgctgctagagattgacaactcggagctg
ctgcacatgctcgagtctccagaatccctccggtcgaaggtggaggaggccgttgcagtg
ttgcaggctcaccaagccaagaaagaagctgcccagaaggtgggcgtggttgctgctacc
tcttaa

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