Egretta garzetta (little egret): 104134978
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Entry
104134978 CDS
T05152
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03015
mRNA surveillance pathway
egz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104134978 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
104134978 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egz03019
]
104134978 (PABPC4)
03041 Spliceosome [BR:
egz03041
]
104134978 (PABPC4)
Messenger RNA biogenesis [BR:
egz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104134978 (PABPC4)
mRNA cycle factors
Stress granule specific factors
104134978 (PABPC4)
Spliceosome [BR:
egz03041
]
Complex C
Other components
Complex C specific factors
104134978 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
RRM_3
NOP5NT
Motif
Other DBs
NCBI-GeneID:
104134978
NCBI-ProteinID:
XP_009646876
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPAA
AQRVGVGTAAQNLAPRPPAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAM
HPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKEAAQKVGVVAAT
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagctgccagcagttacccgatggcatcgctgtacgtgggtgacctgcacccc
gatgtcaccgaggccatgctctatgagaagttcagccccgctgggcccgttctctcgatt
cgggtctgcagagatatgatcacccgccggtccctcgggtacgcctacgtcaacttccag
cagccagcagatgctgagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctaaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagcgggag
gctgagttgggagccaaggcaaaggaattcaccaatgtttatattaaaaactttggggac
gacatggatgatgaaagactaaaggagctcttcagcaaatatggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaatggaaaggatatcaatgggaaaatg
gtatttgtaggccgagcacagaagaaggttgagcgccaggcagagctgaaacggaagttt
gaacagctaaaacaagagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acaagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagctacaaaagctgtgacagagatgaatgggagaattgtgggctca
aagccgttgtatgttgcacttgcacaaaggaaagaagagcgaaaggcccatctaactaat
cagtacatgcagcgcattgctgggatgagagccctgcctgccaacacaattattaatcag
ttccagcctgctgctgggggatatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacctaatcaaatgacgcagatgagacccaacccgcgctggcagcaaggg
ggaagacctcaaggcttccagggaatgccaaatgccatgcgccagtctggaccacggcca
gcactgcgccatctggcccctgccggcaatgctccggcctctcgtggcctccctgccgct
gcccagcgagttggcgttggcaccgcagcgcagaatttagctcctcgtccgcctgcacct
cagcctgcagtacacgtgcagggacaggaaccgctaacggcctccatgctggctgctgcc
cctccccaggagcagaagcagatgctgggagaacgtttgttccctctgattcaagctatg
caccccagccttgcggggaagatcacaggaatgctgctagagattgacaactcggagctg
ctgcacatgctcgagtctccagaatccctccggtcgaaggtggaggaggccgttgcagtg
ttgcaggctcaccaagccaagaaagaagctgcccagaaggtgggcgtggttgctgctacc
tcttaa
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