Emiliania huxleyi: EMIHUDRAFT_418229
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Entry
EMIHUDRAFT_418229 CDS
T02915
Symbol
PABP1
Name
(RefSeq) putative polyadenylate protein with binding domain
KO
K13126
polyadenylate-binding protein
Organism
ehx
Emiliania huxleyi
Pathway
ehx03015
mRNA surveillance pathway
ehx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EMIHUDRAFT_418229 (PABP1)
09123 Folding, sorting and degradation
03018 RNA degradation
EMIHUDRAFT_418229 (PABP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehx03019
]
EMIHUDRAFT_418229 (PABP1)
03041 Spliceosome [BR:
ehx03041
]
EMIHUDRAFT_418229 (PABP1)
Messenger RNA biogenesis [BR:
ehx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
EMIHUDRAFT_418229 (PABP1)
mRNA cycle factors
Stress granule specific factors
EMIHUDRAFT_418229 (PABP1)
Spliceosome [BR:
ehx03041
]
Complex C
Other components
Complex C specific factors
EMIHUDRAFT_418229 (PABP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_7
MARF1_RRM1
YflT
Motif
Other DBs
NCBI-GeneID:
17277086
NCBI-ProteinID:
XP_005784241
JGI:
Emihu1_418229
UniProt:
R1DHZ4
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MQNAYATASLYVGDLHNEVTEALLFELFNAVGPVASIRVCRDSVTRRSLGYAYVNFHSVV
DAERALETMNYTLIKNKPCRIMWCHRDPSLRKSGTGNVFIKNLDKSIDNKALYDTFSAFG
NILSCKVATDESGASKGYGFVHYETQEAAQMAVTRVNGMLLNGKKVFVGFFVSRKERSTD
ENEKAFTNVFIKNLPVEWEDTELNELFAECGTIKSSVVMKAADGKSKGFAFVNYETHEEA
AKAVEELNGKEVNGKAIFVGAAQKKRDRERELREKFEALKVERASKFTGINLYVKNLDDE
VDDEQLREAFVPFGNITSAKVMVDDKGASRGFGFVCFAVQEEATKAVAEMNGHILGQKPL
YVALAQRKDERKNMLEQQHQSRPGGGRMSGGGGGPMYGQMPPQMAMYGQMPPQGPAGARG
FMYPQQMMMRPMGPGGAYQPMGQMANYNYGAIAMGGRGGGRGGMQGGPGGRGGKQGRGGG
GMQQMGPGRGGGMMGPGGPQGRMGKGGGPRGPGQMPPMGMPGQPMPMGPPGGQQGPPQAP
GQLNAATLAAAPPEQQKQLLGERLFPLIQAQEPAMAGKITGMLLEMDNGELLNLLESPDA
LNAKIMEAISVLQMHTDQAAKQEGADPQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacgcctacgccaccgcctcgctctacgttggtgacctccacaacgaggtcact
gaggctctcctcttcgagctcttcaacgctgtcggccccgtcgcctcgatccgcgtctgc
cgcgactcggtgacgcgccgctcgctgggctacgcttacgtgaactttcactccgtcgtc
gacgccgagcgcgcgctcgagacgatgaactacactctcatcaagaacaagccgtgccgc
atcatgtggtgccaccgcgacccgtcgctccgcaagtcggggaccggcaacgtcttcatc
aagaacctggacaagtcgatcgacaacaaggcgctgtacgacaccttctccgccttcggc
aacatcctctcctgcaaggtggccaccgacgagtccggcgcctccaagggctacggcttc
gtgcactacgagacgcaggaggccgcgcagatggctgtgacccgcgtcaacggcatgctg
ctcaacggcaagaaggtcttcgtgggcttcttcgtgtcgcggaaggagcggtcgacggac
gagaacgagaaggccttcaccaacgtcttcatcaagaacctgcccgtcgagtgggaggac
accgagctcaacgagctcttcgccgagtgcggcacgatcaagtcgtcggtcgtgatgaag
gctgccgacggcaagtccaagggcttcgccttcgtcaactacgagacgcacgaggaggcg
gccaaggcggtggaggagctcaacggcaaggaggtgaacggcaaggccatcttcgtcggc
gccgcgcagaagaagcgggaccgcgagcgcgagctgcgcgagaagttcgaggcgctcaag
gtggagcgcgcgtcgaagttcaccggcatcaacctgtacgtcaagaacctggacgacgag
gtggacgacgagcagctgcgcgaggcgttcgtgccgtttggcaacatcacctccgccaag
gtgatggtggacgacaagggcgcctcgcgcggcttcggcttcgtctgcttcgccgtgcag
gaggaggccaccaaggctgtggccgagatgaacggccacatcctcggccagaagccgctg
tacgtggcgctggcgcagcgcaaggacgagcggaagaacatgctcgagcagcagcaccag
tcgcggcccggcggcggccgcatgtcgggcggcggcggcgggccgatgtacggccagatg
ccgccgcagatggcgatgtacggccagatgccgccgcaggggccggcgggcgcgcgcggc
ttcatgtacccgcagcagatgatgatgcggccgatggggccgggcggcgcgtaccagccg
atggggcagatggccaactacaactacggcgccatcgccatgggcggccgcggcggcggc
cgcggcggcatgcagggcggcccgggcggccgcggcggcaagcagggccgcggcggcggc
ggcatgcagcagatgggcccgggccgcggcggcggcatgatgggcccgggcggtccgcag
ggccggatgggcaagggcggcggcccgcgcggccccggccagatgccccccatgggcatg
cccggccagccgatgccgatgggcccgcccggcggccagcaggggccgccgcaggcgccc
ggccagctgaacgcggcgaccctcgcggcggcgccgccggagcagcagaagcagctgctg
ggcgagcggctcttcccgctcatccaggcgcaggagcccgccatggccggcaagatcacc
ggcatgcttctcgagatggacaacggcgagctgctcaacctgctcgagtcgcccgacgcg
ctcaacgcgaagatcatggaggccatctcggtgctgcagatgcacacggatcaggcggcc
aagcaggagggcgccgacccgcagtga
DBGET
integrated database retrieval system
