Escherichia coli KO11FL: EKO11_2720
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Entry
EKO11_2720 CDS
T01718
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eko
Escherichia coli KO11FL
Pathway
eko03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKO11_2720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eko03400
]
EKO11_2720
Enzymes [BR:
eko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKO11_2720
DNA repair and recombination proteins [BR:
eko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKO11_2720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADX51317
LinkDB
All DBs
Position
2823877..2827371
Genome browser
AA seq
1164 aa
AA seq
DB search
MPPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG
VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT
RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI
ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL
PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR
IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRT
INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS
SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK
HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL
AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI
DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQK
AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV
ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVA
RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD
LSERKTRIEWVRQFMRELEENAIA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccccatatgttgaggcatatcctaacgagaatctgacaaccgttatgcctgaacaa
tatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggcgagttaaccggc
gcagcctgtgcaacgctggtagcggaaattgccgaacgtcacgccggtccggtggtactc
attgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagccagttcaccgat
cagatggtgatgaatctggcggactgggaaactcttccctacgacagtttttcgcctcat
caggacattatctcctcgcgcctttccaccctttaccagctaccgacgatgcagcgtggc
gtactgattgttccggtgaatacgcttatgcagcgcgtttgcccacacagttttctccac
ggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgcattacgaacccaa
ctggacagcgccggttatcgccatgttgaccaggtgatggagcacggcgaatacgccacg
cgcggcgcgttgctggatctcttcccgatggggagtgagctgccttatcgtcttgatttc
tttgatgatgaaatcgacagcctgcgggtgtttgacgtcgacagccagcgcacgctggag
gaagtagaagcgatcaatctgctgcccgcgcacgaatttccgaccgataaagcggcaatt
gaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgatccggaacatatt
taccagcaagtgagtaaaggcacattacctgccgggatcgagtactggcagccattgttc
ttcagcgaaccactgccgccgctgttcagttatttccctgccaataccttgctcgtgaat
actggcgatctggaaaccagtgccgaacgtttccaggctgacacgctggcgcgttttgag
aatcgcggcgtcgatccgatgcgcccgctgttgccaccacaatcgctctggctgcgggtg
gacgagctcttctcagagctgaaaaactggccccgggtgcagctaaaaactgaacattta
ccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagacctggccgttcag
gcgcaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagactttcgacggtccg
gtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaactgctcgcacga
attaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgaccgtgggcgttat
ctgatgattggcgctgccgaacatggttttgtcgataaggtgcgtaatctggcgctgatc
tgcgaaagcgatctgctcggtgaacgtgttgcccgccgtcgtcaggattctcgccgcacc
atcaaccccgatacactgatccgtaaccttgcggagctgcatattggtcagccggtggtc
catctggagcacggtgtcgggcgctatgccggaatgaccacgctcgaagcgggcggcatt
actggcgagtatttgatgctcacctatgccaacgacgccaaactgtatgttccggtgtcg
tcactgcatctgattagccgttacgcaggtggcgcggaagaaaacgccccgctgcataaa
cttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaagtgcgtgatgtg
gcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggcttcgcgtttaaa
cacgatcgtgagcagtatcagttgttctgcgacagcttcccgtttgaaaccacgccggat
caggcgcaggccattaatgcggtacttagcgacatgtgtcagccgctggcaatggatcgt
ctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgcgccgctttcctg
gcagtagataaccacaagcaggtggcggtgttggtgcctaccacccttctcgcgcagcag
cattacgacaacttccgcgaccgtttcgccaactggccggtacgtatcgaaatgatctcc
cgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcggaagggaaaatc
gatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagtttaaagatttaggc
ctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagagcgtattaaagcg
atgcgcgcgaacgtggatattctgacgcttactgcaacgccgatcccacgtacgctgaat
atggcaatgagcggaatgcgtgacctgtcgattatcgccacgccgcccgcccgtcgtctg
gcagttaaaacctttgtccgtgagtatgacagcctggtggtccgggaggcgatcctgcgt
gaaattttgcgcggaggacaggtttattatctctacaatgatgtggaaaacattcagaaa
gccgccgaacggctggcagaactggtgccagaagcgcggatcgccatcggtcacgggcag
atgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaacgtttcaacgtg
ctggtttgtacaaccattatcgaaaccgggatcgacatcccgacagccaacaccattatc
attgaacgcgcggatcacttcggtctggcgcagctgcaccagttacgcggtcgcgtcgga
cgttcacatcatcaggcatatgcatggttgctgacgccgcatccaaaagcgatgactacc
gatgcacaaaaacgtcttgaagcgattgcctcgctggaagatctcggggcaggttttgcg
ctggcaacgcacgatctggagattcgcggcgcgggtgaactgcttggcgaagaacaaagc
ggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaaaacgccgtcgat
gcactgaaagccggacgcgagccgtcgctggaagatctcaccagccagcaaacagaagtc
gagctgcggatgccgtcgctattgccagatgatttcattcctgacgtgaatacgcgtttg
tcgttctataaacgtattgccagcgccaaaacggaaaacgaactggaagagatcaaagtc
gagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctgctggatgttgcc
cgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggtaatgagaaaggc
ggggtgatcgaatttgccgagaagaatcacgttaatccggcctggttgattggtttgctg
caaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaaatttattcaggat
ttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgtgaactggaagag
aacgcgatcgcttaa
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