Escherichia coli clone D i14: i14_4534
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Entry
i14_4534 CDS
T02003
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
elc
Escherichia coli clone D i14
Pathway
elc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
i14_4534 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elc03021
]
i14_4534 (rpoB)
03400 DNA repair and recombination proteins [BR:
elc03400
]
i14_4534 (rpoB)
Enzymes [BR:
elc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
i14_4534 (rpoB)
Transcription machinery [BR:
elc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
i14_4534 (rpoB)
DNA repair and recombination proteins [BR:
elc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
i14_4534 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AER91970
LinkDB
All DBs
Position
4535167..4539228
Genome browser
AA seq
1353 aa
AA seq
DB search
MGRLVSELRNPMVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGL
EAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA
PEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK
VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI
FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV
EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE
TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL
LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV
RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR
ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET
PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ
VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA
VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP
CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT
TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP
KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE
EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN
QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR
HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG
AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG
SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV
DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgacttgtcagcgagctgaggaaccctatggtttactcctataccgagaaaaaa
cgtattcgtaaggattttggtaaacgtccacaagttctggatgtaccttatctcctttct
atccagcttgactcgtttcagaaatttatcgagcaagatcctgaagggcagtatggtctg
gaagctgctttccgttccgtattcccgattcagagctacagcggtaattccgagctgcaa
tacgtcagctaccgccttggcgaaccggtgtttgacgtccaggaatgtcaaatccgtggc
gtgacctattccgcaccgctgcgcgttaaactgcgtctggtgatctatgagcgcgaagcg
ccggaaggcaccgtaaaagacattaaagaacaagaagtctacatgggcgaaattccgctc
atgacggacaacggtacctttgttatcaacggtactgagcgtgttatcgtttcccagctg
caccgtagtccgggggtcttttttgactccgacaaaggtaaaacccactcttcgggtaag
gtgctgtataacgcgcgcatcatcccttaccgtggttcctggctggacttcgaattcgat
ccgaaggacaacctgttcgtacgtatcgaccgtcgccgtaaactacctgcgaccatcatt
ctgcgtgccctgaactacaccacagagcagatcctcgacctgttctttgaaaaagttatc
tttgaaatccgtgataacaagctgcagatggaactggtgccggaacgcctgcgtggtgaa
accgcatcttttgacatcgaagctaacggtaaagtgtacgtagaaaaaggccgccgcatt
actgcgcgccatattcgccagctggaaaaagacgacgtcaagctgatcgaagtcccggtt
gagtacatcgcaggtaaagtggttgctaaagactacattgatgagtctaccggcgagctg
atctgcgcagcgaacatggagctgagcctggatctgctggctaagctgagccagtctggt
cataagcgtatcgaaacgctgttcaccaacgatctggatcacggcccatatatctctgaa
accttacgtgtcgacccaactaacgaccgtctgagcgcactggtagaaatctaccgtatg
atgcgccctggcgagccgccgactcgtgaagctgctgaaagcctgttcgagaacctgttc
ttctccgaagaccgctatgacttgtctgcggttggtcgtatgaagttcaaccgttctctg
ctgcgcgaagaaatcgaaggttccggtatcctgagcaaagacgacatcattgatgttatg
aaaaagctcatcgatatccgtaacggtaaaggcgaagtcgatgatatcgaccacctcggc
aaccgtcgtatccgttctgttggcgaaatggcggaaaaccagttccgcgttggcctggta
cgtgtagagcgtgcggtgaaagagcgtctgtctctgggcgatctggataccctgatgcct
caggatatgatcaacgccaagccgatttccgcagcagtgaaagagttcttcggttccagc
cagctgtctcagtttatggaccagaacaacccgctgtctgagattacgcacaaacgtcgt
atctcggcacttggcccaggcggtctgacccgtgaacgtgcaggcttcgaagttcgagac
gtacacccgactcactacggtcgcgtatgtccaatcgaaacccctgaaggtccgaacatc
ggtctgatcaactccctgtccgtgtacgcacagactaacgaatacggcttccttgagact
ccgtatcgtaaagtgaccgacggtgttgtaactgacgaaattcactatctgtctgctatc
gaagaaggcaactacgttatcgcccaggcgaactccaacctggatgaagaaggccacttc
gtagaagacctggtaacttgccgtagcaaaggcgaatccagcttgttcagccgcgaccag
gttgactacatggacgtatccacccagcaggtggtatccgtcggtgcgtccctgatcccg
ttcctggaacacgatgacgccaaccgtgcattgatgggtgcgaacatgcaacgtcaggcc
gttccgactctgcgtgctgataagccgctggttggtacgggtatggaacgtgctgttgcc
gttgactccggtgtaactgcggttgctaaacgtggtggtgtcgttcagtacgtggatgct
tcccgtatcgtaatcaaagttaacgaagacgagatgtatccgggtgaagcaggtatcgac
atctacaacctgaccaaatacacccgttctaaccagaacacctgtattaaccagatgccg
tgtgtgtctctgggtgaaccggttgaacgtggcgacgtgctggcagacggtccgtccacc
gacctcggtgaactggcgcttggtcagaacatgcgcgtagcgttcatgccgtggaatggt
tacaacttcgaagactccatcctcgtatccgagcgtgttgttcaggaagaccgtttcacc
accatccacattcaggaactggcgtgtgtgtcccgtgacaccaagctggggccagaagag
atcaccgctgacatcccgaacgtgggtgaagctgcgctctccaaactggatgaatccggt
atcgtttacattggtgcggaagtgaccggtggcgacattctggttggtaaggtaacgccg
aaaggcgaaactcagctgaccccagaagaaaaactgctgcgtgcgatcttcggtgagaaa
gcgtctgacgttaaagactcttctctgcgcgtaccaaacggtgtatccggtacggttatc
gacgttcaggtctttactcgcgatggcgtagaaaaagacaaacgtgcgctggaaatcgaa
gaaatgcagctcaaacaggcgaagaaagacctgtctgaagaactgcagatcctcgaagcg
ggtctgttcagccgtatccgtgctgtgctggtagccggtggcgttgaagctgagaagctc
gacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaat
cagctggaacagctggctgagcagtatgacgaactgaaacacgagttcgagaagaaactc
gaagcgaaacgccgcaaaatcacccagggcgacgatctggcaccgggcgtgctgaagatt
gttaaggtatatctggcggttaaacgccgtatccagcctggtgacaagatggcaggccgt
catggtaacaagggtgtaatttctaagatcaacccgatcgaagatatgccttacgatgaa
aacggtactccggtagacatcgtactgaacccgctgggcgtaccgtctcgtatgaacatt
ggtcagatcctcgaaacccacctgggtatggctgcgaaaggtatcggcgacaagatcaac
gccatgctgaaacagcagcaagaagtcgcgaaactgcgcgaattcatccagcgtgcgtac
gatctgggcgctgacgttcgtcagaaagttgacctgagtaccttcagcgatgaagaagtt
atgcgtctggctgaaaacctgcgcaaaggtatgccaatcgcaacgccggtcttcgacggt
gcgaaagaagcagaaattaaagagctgctgaaacttggcgacctgccgacttctggtcag
atccgcctgtacgacggtcgcactggtgaacagttcgagcgtccggtaaccgttggttac
atgtacatgctgaaactgaaccacctggtcgacgacaagatgcacgcgcgttccaccggt
tcttatagcctggttactcagcagccgctgggtggtaaggcacagttcggtggtcagcgt
ttcggggagatggaagtgtgggcgctggaagcatatggcgcagcatacaccctgcaggaa
atgctcaccgttaagtctgatgacgtgaacggtcgtactaagatgtataaaaacatcgtg
gacggcaaccatcagatggagccgggcatgccagaatccttcaacgtattgttgaaagag
attcgttcgctgggtatcaacatcgaactggaagacgagtaa
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