Escherichia coli clone D i2: i02_1688
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Entry
i02_1688 CDS
T02004
Symbol
ydcS
Name
(GenBank) ABC transporter periplasmic-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
eld
Escherichia coli clone D i2
Pathway
eld02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
i02_1688 (ydcS)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
eld02000
]
i02_1688 (ydcS)
Transporters [BR:
eld02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
i02_1688 (ydcS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
Phosphonate-bd
Glyco_hydro_62
Motif
Other DBs
NCBI-ProteinID:
AER84260
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All DBs
Position
1645366..1646511
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AA seq
381 aa
AA seq
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MSKTFARSSLCALSMTIMTAHAAEPPTNLENPEGRLDIIAWPGYIERGQTDKQYDWVTQF
EKETGCAVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKA
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKG
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHNLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
KWMNWSLTPKVQGDVAAWFGSLPVVPQGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
GGKFVPYSRWTQDYIAIMGGR
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacatttgcccgcagcagcctgtgtgcgctcagcatgacaataatgaccgct
cacgccgccgaaccgcctaccaatttagagaatccggaagggcgactggatattatcgcc
tggccgggatacatcgaacgcggacaaactgataaacagtacgactgggtaacgcaattc
gaaaaagagacaggctgcgcggtgaatgttaaaaccgccgcgacttccgatgaaatggtc
agtctgatggccaaagggggttacgatctggttacggcatccggcgatgcctcgctgcgt
ttgattatgggcaaacgcgtgcagccgattaataccgccttgattcccaactggaaagcg
ctcgatccgcgcgtggttaaaggcgactggtttaacgttggcggcaaagtttacggcaca
ccttaccaatgggggccgaacctgctgatgtacaacactaaaaccttcccgacgccgccg
gatagctggcaagtggtttttgttgagcagaatctgccggacggcaagagcaataaaggc
cgggtacaggcttatgatggccctatctacattgcggatgccgcgttgttcgtcaaagcc
acgcagccacagttgggcatcagtgatccgtatcaactcaccgaagaacagtatcaggcg
gtgctgaaagtgctgcgcgatcaacataatttgatccatcgctactggcatgacactacc
gtgcaaatgagcgatttcaaaaacgagggtgtggttgcttccagtgcatggccctatcag
gccaacgccctgaaagccgaaggccagcctgtcgctaccgttttcccgaaggagggcgtt
accggttgggctgacaccaccatgctacatagcgaagcgaaacatccggtttgcgcctac
aaatggatgaactggtcattaaccccaaaagtgcagggcgatgtggcggcctggtttggc
tcgctaccagtagtgccgcaagggtgtaaagccagtccgttattaggcgagaaaggttgt
gaaacaaacggttttaactatttcgataaaatcgccttctggaaaacgcctatagcagaa
gggggcaagtttgttccctacagtcgctggacgcaggattacattgccattatgggcggt
cgctaa
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