Elizabethkingia anophelis FMS-007: M876_14790
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Entry
M876_14790 CDS
T03946
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
emn
Elizabethkingia anophelis FMS-007
Pathway
emn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M876_14790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emn03021
]
M876_14790
03400 DNA repair and recombination proteins [BR:
emn03400
]
M876_14790
Enzymes [BR:
emn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M876_14790
Transcription machinery [BR:
emn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M876_14790
DNA repair and recombination proteins [BR:
emn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M876_14790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
NfeD
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AKH95829
LinkDB
All DBs
Position
3154147..3157971
Genome browser
AA seq
1274 aa
AA seq
DB search
MSKTQTPKTRENQRINFSSSKGKVITPDFLDIQIQSFKEFFQLDTLPEARLDETLYKTFQ
ENFPITDSRNQFVLEFLDYLVDAPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQT
VVQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFK
GSWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKK
VEGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETVLEKEHLDLILESGVKTILI
HKENGNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYS
LGEVGRYRLNKKLGLNIPIDTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTV
GEQLAGQFGVGLSRIARTIKERMNVRDNEIFTPIDLVNAKTLTSVINSFFGTNQLSQFMD
QTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLG
IYAKINNLGFIETPYRKVENGKVDLNADPIYLNAEDEEAKVIAQANVELSDSGDFETDRI
IARLDGDYPVVEPGQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLR
PQAPIVGTGLEKQVATDSRILINAEGTGVVEYVDADKITIKYERSEDEDLVNFESATKSY
KLTKFRKTNQSTTITLKPIVRVGDTVAKGQVLCEGYATEKGELALGRNLVVAFMPWKGYN
FEDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMI
RIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINK
KLFSRNIKDKKKRTEEKLKLEEVENRYKEKFDDLRNTLLEKLNILVSGKTSQGVKNDLDE
ELIGKGVKFTQKLLSSVEDYVNVSGSDWTVDADKNELIKQLIHNYKIKYNDLQGVKNREK
FAISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTA
VDIVLNPLGVPSRMNIGQIYETVLGWAGKKLGLKFATPIFDGAELDQITEYTEKAELPAY
GNTYLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGG
QRFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLL
HELQGLGLDVRLEE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacacagacgccaaaaactcgggaaaaccaaagaattaacttctcctcttcc
aaaggaaaagttataactcctgattttctggacattcagatccagtctttcaaggagttt
ttccagcttgatacactgccggaagctagattggatgaaactctttacaaaactttccag
gaaaactttcctattacagactcaagaaaccagtttgtattagaattccttgactattta
gtagatgcacctcgttattctatcgacgagtgtgtagaaagaggtctaacctacagtgta
ccattaaaagcaagacttaaattgtattgtactgacccggaacatgaagatttccaaaca
gtagtacaagacgtatatttaggtccggtaccatacatgactcctagtggttcatttatc
atcaacggagcagagcgtgttatcgtaactcagttacaccgttcaccgggggtattcttc
ggacagacttaccacgcaaacggtaccaagttgtattattccagaattattcctttcaaa
ggatcttggatggaatttacaacggatatcaacagcgtaatgtacgcttacatcgaccgt
aagaaaaaattacctttaactacacttttaagagctatcggttatgagtctgataaggat
atccttcagattttcgaccttgctgaagaagtgaaagtttctaaagctgcacttaaaaaa
gtagaaggaagaacattagctgcgagagttttgaatacatggttcgaagatttcgtagat
gaggatacaggtgaagtagtttctatcgaaagaaacgaaatcatcttggacagagaaact
gttcttgaaaaagagcatctggatcttatccttgaatctggtgtaaaaacaattcttatc
cacaaagaaaacggaaatgaattctctattatccagaacactttacaaaaagaccctacc
aactccgaaaaagaagcggtagaatatatctacagacagttacgtaacgcagatccacca
gatgaggaaactgcaagaggaattattgagaaattattcttctctgaacagcgttattct
cttggtgaagtaggtcgttaccgtctgaacaaaaaattaggattaaacatcccaatcgat
actgaagttttaacaaaagaagatattatcgctattgttagacacctaatcgaattggta
aactctaaagctgaggttgatgatatcgaccacctttctaacagaagaattaaaactgtt
ggagagcaattagcgggacagtttggtgtaggtctttccagaattgcaagaacaattaag
gaaagaatgaacgttagagataatgaaatctttacacctattgatcttgttaatgctaaa
acgttaacatcagtaatcaattcattctttggtaccaaccagctttctcagttcatggac
caaaccaacccattatcagagatcactcacaagagaagattatctgcactagggcctggt
ggtttatcaagagaaagagcaggtttcgaggttcgagatgttcaccatactcactacggt
agaatttgtccgatcgaaactccggaagggccaaacattggtttgatctcttctttaggt
atctatgctaagatcaataaccttggtttcatcgaaactccatatagaaaagtagaaaat
ggtaaagtagacttaaatgctgatccaatctacctgaatgcagaggatgaagaagctaaa
gtaattgctcaggcgaacgtggaactaagcgacagtggggacttcgaaacagacagaatt
attgctcgtctggacggtgactaccctgtagtagagccaggtcaggtagaccttatcgac
gttgcaccaaaccagatttctggtatctctgcatcattaattcctttcttggaacatgat
gatgcgaaccgtgcgttgatgggatctaacatgatgcgtcaggctgttccgttattaaga
ccacaagctccgattgtaggtacaggtttggaaaaacaagtagctactgactccagaatt
ttgattaatgctgaaggaactggtgttgtagagtatgtagatgctgataaaattacaatt
aagtacgaaagaagcgaggatgaagatttagtaaacttcgaatctgcgactaagtcttat
aaattaactaagttcagaaaaaccaaccagagtactactattactttgaagcctatcgta
agagtaggtgacactgtagcaaaaggacaagtactttgtgaaggttatgcaactgaaaaa
ggagaactggcactaggtagaaacttagtagtagccttcatgccttggaaagggtacaac
tttgaggatgcaattgtaatcaacgagaaagttgttcgtgaagactggtttacttctatc
cacgtagatgaatattcattagaagttcgtgataccaaactaggtatggaagaactaaca
gctgatattccaaacgtatctgaagaagctactaaagatcttgatgagaacggtatgatc
cgtatcggtgctgaggtgaagcctggtgatatccttatcggaaaaatcactccaaaaggt
gaatctgatccaactccggaggaaaaacttttacgtgcaatctttggtgacaaagctggt
gatgtaaaagatgcttcattgaaggctgactcttcattaagaggggtagttatcaacaaa
aagttattctccagaaatattaaagacaaaaagaaaagaactgaagagaaacttaagctt
gaagaagttgaaaacagatacaaagagaaattcgatgatctgagaaatacacttcttgaa
aaacttaacattcttgttagcggtaaaacttctcagggtgtgaaaaacgaccttgatgaa
gaacttatcggtaaaggtgtgaagtttactcaaaagttactttctagtgttgaagattac
gtaaacgtaagcggatctgactggacggttgatgcagataaaaatgaattaatcaaacag
ttaatccacaactataagattaagtacaacgaccttcagggtgttaagaaccgtgagaaa
tttgcaatttctatcggtgacgaattaccagcaggtatcatgaagttagctaaagtttac
atcgctaagaaacgtaaactgaatgtaggggataaaatggcaggacgtcacggtaacaaa
ggtattgtttccagaatcgttcgtgaagaagatatgccgttccttgaagatggtacagct
gtagacatcgttcttaacccactaggggtaccttcccgtatgaacatcggtcagatttat
gagaccgtattaggatgggccggtaaaaaactaggactgaagtttgctacaccaatcttc
gatggtgctgagctagaccagatcactgagtacactgaaaaagcagaacttccggcatac
ggaaatacctacttatatgacggtggtacaggtgagagatttacacagcctgcgacagtt
ggggtaatctacatgttgaaactaggacacatggttgatgataaaatgcacgcacgttca
attggaccatactcattgattacgcagcagccgttaggaggtaaagctcagttcggtggt
cagcgtttcggagagatggaggtttgggcactagaagcatttggtgcatctaacatcttg
agagaaatcttaactgtgaagtctgatgacgtgattggtagagcaaaaacttatgaagct
atcgcgaaaggagaagcgatgcctgaaccaggtatccctgaatctttcaacgtattactt
cacgagttacaaggtctaggactagatgtaagattggaggagtaa
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integrated database retrieval system
