Enterobacter lignolyticus SCF1: Entcl_4177
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Entry
Entcl_4177 CDS
T01342
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
esc
Enterobacter lignolyticus SCF1
Pathway
esc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
esc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Entcl_4177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esc03021
]
Entcl_4177
03400 DNA repair and recombination proteins [BR:
esc03400
]
Entcl_4177
Enzymes [BR:
esc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Entcl_4177
Transcription machinery [BR:
esc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Entcl_4177
DNA repair and recombination proteins [BR:
esc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Entcl_4177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
ADO50410
UniProt:
E3G361
LinkDB
All DBs
Position
complement(4508950..4512978)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIA
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LLPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEYIAGKVAAKD
YVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDDGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGLVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVLRLAENLRKGMPIATPVFDGAKEAEIKELLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtactggatgtgccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaaggtcagtacggtctggaagcggctttccgctccgtgttccctattgcg
agctatagcggcaattctgagctgcagtatgttagctatcgcctgggcgagccggtattt
gacgttcaggaatgtcagatccgtggcgtgacctattccgccccgctgcgcgttaagctg
cgtctggtgatctacgagcgtgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgataacggtacctttgtcatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagccctggcgtcttctttgacagcgac
aagggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtattatcccttaccgc
ggctcctggctggacttcgaattcgatccgaaagacaacctgttcgttcgtatcgaccgt
cgtcgtaaactgcctgcgaccattattctgcgtgcgctgaattacaccaccgagcagatc
ctcgatctgttcttcgagaaagtggtctttgaaatccgcgacaacaagctgcagatggag
ctgttgccggaacgcctgcgtggcgaaaccgcgtcgttcgacatcgaagccaacggtaaa
atctacgttgagaaaggtcgtcgtatcactgcgcgccacatccgccagctggaaaaagat
gaaatcaaacacatcgaagttccggttgagtacatcgcaggtaaggttgccgctaaagat
tacgttgatgaatctaccggcgagctgatctgcccggcgaacatggagctgagcctggat
ctgctggcgaagctgagccagtccggccacaagcgcattgagaccctgttcaccaacgat
ctggaccacggcccgtacatgtctgaaaccgtacgcgtcgacccgaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgcccgggtgagccgccgactcgcgaagcg
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctatgacctgtctgcggtc
ggccgcatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggctccggcattctg
agcaaagctgacatcatcgacgtgatgaagaagcttatcgatatccgtaacggcaagggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttccgcg
gcggtgaaagagttcttcggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtctgagattacgcacaagcgtcgtatctctgcactcggcccaggcggtctgacccgt
gagcgcgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacccctgaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
acgaacgaatacggtttcctggaaaccccgtatcgtaaagtgaccgacggcgttgtgacc
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgacggccacttcgtagaagatctggttacctgccgtagcaaaggc
gaatccagcctgttcagccgcgaccaggtcgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggtcccgaccctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaactgcggttgcgaaacgc
ggcggtctggtgcagtacgtggatgcgtcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtctctctgggtgagccggttgagcgcggc
gacgtgttggctgacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtctccgag
cgtgtggttcaggaagatcgtttcaccaccattcacatccaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgatatcccgaacgtgggtgaagct
gcgctctctaaactggacgaatccggtatcgtttacatcggtgcggaagtgaccggcggc
gacattctggtcggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgtg
ccgaacggtgtttccggtaccgttatcgacgttcaggtcttcactcgcgacggcgttgag
aaagacaaacgcgcgctggaaatcgaagaaatgcagctcaagcaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagcgggtctgttcagccgtatctatgcggtgctggtt
tccggcggcgttgaagccgagaagctggacaaactgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaaacagaatcagctggaacagctggctgagcagtatgacgaa
ctgaagcacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtctatctggccgttaaacgtcagatc
cagccgggtgataagatggcgggccgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccgcacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggcatcggcgacaagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgagttcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgaagaagttctgcgtctggcggaaaacctgcgtaaaggtatg
ccgatcgcaacgccggtattcgacggtgcgaaagaagcggaaatcaaagagctgctgcag
ctgggcgacctgccgacctccggtcagatcaccctgtttgacggccgtaccggtgaacag
ttcgagcgtccggtaaccgtaggttacatgtacatgctgaaactgaaccacctggtcgac
gacaaaatgcacgctcgttccaccggttcctacagcctggttacccagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcagcctacaccctgcaggaaatgcttaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataagaacatcgtggacggcaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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integrated database retrieval system