Candidatus Endomicrobium trichonymphae Rs-D17: RSTT_473
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Entry
RSTT_473 CDS
T05087
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
eti
Candidatus Endomicrobium trichonymphae Rs-D17
Pathway
eti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSTT_473 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eti03400
]
RSTT_473 (uvrB)
DNA repair and recombination proteins [BR:
eti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSTT_473 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSTT_473 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
UVR
P-loop_SecA
AAA_7
AAA_22
Microtub_bd
Flavi_DEAD
SWI2_SNF2
HEM4
AAA_25
AAA_30
AAA_33
DUF2963
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
BAV59053
LinkDB
All DBs
Position
complement(722542..724560)
Genome browser
AA seq
672 aa
AA seq
DB search
MKNEFKLISKFKPSGDQPQAIDKLYHNYLNNKNSQILLGVTGSGKTFVMASVIEKLQKPT
LIISPNKILAAQTYAEFKAFFPNNSVEYFISYYDYYQPEAYIPSSDTYIEKDASINDHID
RLRLKATTSILERKDVIVVASVSCIYNLGSPKDYQNMCVEIIAGKEKTISLLLTELIASR
YERNEVEFKRGKFRVKGDTVEIFPAYLETAVKIEFCGDTVERIKEFNPVTGEVISKKDKA
YIYPAKLFVTDKYKVDKALKTIQIELNTRLEVLKSQNKFLEAQRLEQRTKYDIEMLKETG
SCNGIENYSRHLSGGLSGAKPTTLIDYFVQENDDFLIITDESHISLPQIRGMYEGDRSRK
QTLVDFGFRLPSALDNRPLKFQEFEKVIRKFMMVSATPGTYELNRSKKYIVDLIIRPTGL
VDPEIVIRPISGQIQDLMQEIRKNVEKKQRTLVTTLTKKMSEDLAAYLKEKGIKVEYLHS
EIDTLTRIEILKNLRLGKFDVLVGINLLREGLDLPEVSLVVVLDADKEGFLRSEPTLIQI
CGRAARNIDGRVIFYADTVTGSMQRALREMNRRRDKQLEHNKKNNIKPKSIIKAVHELDE
FRNLSREESMNHIVAEEQLNYNITPKNIGNIIKEVELQMRESADNLDFESAAALRDRMLE
LKNMKSCKSSKR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgaatttaaactgatttcaaaattcaaaccgtccggtgaccagccgcaggct
atcgataagctgtatcataattatttaaataataaaaactcgcagattttgcttggcgtt
acaggttcgggaaaaacatttgttatggcaagcgttattgaaaaacttcagaaacctacg
cttataatatcgccgaacaaaattttagcagcgcagacttatgctgaatttaaggctttt
tttccaaataattccgtagaatattttatatcttattacgactattaccagcctgaagcc
tatattccttcaagcgacacatacatagaaaaagatgcgtcaataaatgaccatatagac
agattgcgtttaaaagcgactacttctattcttgagagaaaagatgttattgtagtcgct
tctgtttcgtgtatatataatctgggatctcctaaagattatcaaaatatgtgcgttgaa
ataattgctggaaaagaaaaaacaataagtctgcttttaacagaacttattgcaagccgt
tatgagagaaatgaagttgaatttaaaagggggaagttcagggtaaaaggcgatactgtt
gaaatttttcccgcttaccttgaaactgccgtaaaaattgagttttgcggcgatacggtt
gaaaggataaaagaatttaatccggtaactggtgaagtaattagtaaaaaagataaagcc
tatatttatcctgcaaaactttttgtcactgataagtataaggttgataaagctttaaaa
accatacagatagaattgaatacgcggcttgaggtattaaagtctcaaaataaatttctt
gaagcacagcgtcttgaacagagaacgaaatacgatattgaaatgttaaaagaaaccgga
tcgtgcaatgggattgaaaactattcaagacatctttcaggcggtctgtcgggagctaaa
ccgactactcttatagattatttcgtgcaggaaaatgatgattttttaataataactgac
gaatcgcatatttctcttccgcagataagaggaatgtatgaaggcgacaggagcagaaaa
caaactcttgtagattttggtttcagactgccttctgctttagataacagacctttgaag
tttcaggaatttgaaaaagttataagaaaatttatgatggtctcggcaactccgggaaca
tacgagcttaatagaagcaaaaaatatatagtggatttgattattcgccctactggactt
gtagatccagaaattgtcatccgtcctataagcgggcagatacaggatttaatgcaggaa
atacggaaaaatgttgagaaaaaacagagaaccttagttactacgcttacaaaaaaaatg
tccgaagatttggcggcttatttgaaagaaaaagggattaaagttgaatatttgcattct
gaaatagatactttaacaagaatagaaatacttaaaaatctgcgtcttggtaaatttgac
gttttagtgggaataaatcttttgagagaaggattagatttgcctgaagtatctttggta
gttgttttagatgctgataaagagggctttttgcgttctgaacctacgcttatccagatt
tgcggaagagctgcgagaaatattgacgggcgagtcattttctatgcggatactgtgacc
ggttcgatgcagagagctttaagagaaatgaaccgcaggcgcgataaacagcttgaacat
aataaaaaaaacaatattaaacccaagtcaataatcaaagccgttcacgaacttgacgag
tttagaaatttatcaagagaagaatctatgaatcatattgttgccgaagaacagcttaat
tataatatcactcctaaaaatattggcaacataataaaagaagttgaattacagatgaga
gaatctgctgacaatcttgattttgaatcagctgcagccttaagggacagaatgcttgaa
ctaaaaaatatgaaatcctgcaaatcttctaagcgttaa
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