Filifactor alocis: HMPREF0389_00983
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Entry
HMPREF0389_00983 CDS
T01663
Name
(GenBank) exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
faa
Filifactor alocis
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
faa03400
]
HMPREF0389_00983
DNA repair and recombination proteins [BR:
faa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMPREF0389_00983
Archaeal homologous recombinant proteins
HMPREF0389_00983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Tsi1
RhoGEF67_u1
Motif
Other DBs
NCBI-ProteinID:
EFE29061
UniProt:
D6GQK8
LinkDB
All DBs
Position
complement(1607605..1610736)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKPIKLTLSGFITYRDTQTIDFTKFEQGSLFIVSGATGSGKTTIFDAICFALYGKISSQN
RGEGEELRSQYLSPEDDKTFVEFEFQENGERIRIRREPRQVMKRPRGKIDTVSEEVELYL
GNEVMTSKREVDEKIVELTGLTWDQFTKIVMLPQGEFRKFLSASSKEKEEILRKIFDTVP
YQRFLEQVKQKYSMIQKKFEKMKDEVNALVSILDLEESACIQEFLNDNSLEPAFYLKALE
NMVQEQEKNRKETEEIEESLKKFEQQYQNCKNQISMANRHNAQLSQFQQKQEELGKLIPL
EQEMKKRKEACIQAEKALSFYKEEVRLESVSDRIQKRNEELEQLIQQEKEWEEKSVAAKK
EAEKIPYLSEEEEKKVKELEEWNQKEEQYGRLQEVLHQEKEFEVQKRKLEQEKIKIQTSL
KECEEVLRSLEKIGEKFEKSQEELLQTEKELSKTEWELDKYRLIYRELKKMEKFEQDLSL
LQKSLGTNQQNSVLLYQKVQDAKKEFEQSLLTVYARDLEEGTACPLCGSIHHPHPIHEVT
SVTKEEIISLEEQLKEIQETAVRQQTEKKHLEDAILSSREQILQLQETSAFQVREFSGTS
EELVFYEECGKSCADRKKNLEQTQVRLQAECKEYKRKRELEKNEREQVERWQEKMQNIMI
QAEKLSVASEHSTRLKTELEEKLKGIDEQQLKSQRQTLMKEKKQIHETIEKVRTELQKSV
DAYSKISTKVSEWKQYQKEETSRYRAEKQDWERKITQEFSDMETYRNNCMEESVLEQEKK
QVEEFLEEYRVLSVEVKTLEQTLESKTAIDIQPLEKEIYSLEEVRKELQNTKEKLQQQYK
SVHMLENKIREVLSHEEEYALKRMNLAKLYQLCSGENPMKATLETYVLMYFFEEVLMYAN
QRLYKMTDGQYTLYRKEDNFKGGGKNRGLELEILDTNVGKKRSTAMLSGGESFLASLALA
LGLSDAIMNTAGQIEIDTLFIDEGFGTLDQDRLQSAVDCLLELAGRNRMIGIISHVEELK
STIPNKIIVTYEKERGSTLSLMY
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaattaaactgacactttccggatttatcacttatcgagatacacaaacaatt
gattttacgaagtttgagcaaggctctctgtttattgtttccggtgcgaccggttcaggt
aagacgacgatttttgatgcaatttgttttgcactctatggcaaaatcagcagccaaaat
cgtggggaaggagaagaactgcgttcacagtatctttcgccggaggatgataaaactttt
gtagagtttgaattccaagagaacggagaaaggattcggattcgtcgagagccgaggcag
gtgatgaagagaccgcgcggaaaaatcgacaccgtttcggaagaggtggaattgtatctc
ggcaacgaggtgatgacttccaagagagaggttgatgaaaaaattgtggaactgaccggt
ttgacatgggatcagtttaccaaaattgtgatgttgcctcagggagagtttcgcaaattt
ttgagtgcatcgtcaaaggaaaaagaagaaattttgcgaaaaatttttgatactgtgcca
tatcaaagatttttggaacaagtgaaacagaaatattctatgattcaaaagaagtttgaa
aagatgaaagatgaagtaaatgccttggtttctattttggatttggaagagagtgcatgt
attcaggaatttttgaatgacaatagcttggaaccggcattttatctcaaagcattagaa
aacatggtgcaggaacaagaaaaaaacaggaaggaaaccgaagagatagaagagtccttg
aaaaaatttgaacaacagtatcaaaactgtaaaaatcaaatttcaatggcgaatcgacac
aatgcgcagctatctcaatttcaacagaaacaggaggaattgggaaaactcattcccctc
gaacaggagatgaaaaagagaaaagaggcttgtattcaggcggaaaaggcactctctttc
tacaaggaagaagttcgattggaatccgtttcagataggattcaaaagagaaatgaagaa
ttggaacagttgattcaacaagaaaaagagtgggaagaaaaaagtgttgctgcgaaaaaa
gaggcggagaaaattccttatttgagtgaagaggaagaaaaaaaggtcaaagaattagag
gaatggaatcaaaaagaagagcagtatggcagattgcaggaggttttacatcaggaaaaa
gagtttgaagtacagaaaaggaagttggagcaagaaaaaatcaagatacagacttctctg
aaagagtgtgaagaagtattgcgttcgcttgaaaaaatcggagaaaagtttgaaaaatcg
caagaagagttgttgcagacagaaaaagagttaagcaaaacagagtgggaattggataaa
tatcgcttgatttatcgagagttgaaaaagatggaaaaatttgagcaggacctctccttg
ttacaaaaaagtcttggtaccaaccaacagaattcagttttgttatatcaaaaagtgcaa
gatgcgaaaaaagagtttgagcaatctcttttgacagtgtatgcaagagatttggaagag
ggaacagcatgtccgctttgcggttcgattcatcatcctcatccgattcatgaagtgact
tctgttacgaaagaggagataatctctttggaagaacagctcaaagagatacaggagacg
gcggtcagacaacaaacggagaaaaaacatctggaggatgcgattctttcttcaagggag
cagattttacagttacaagagacatctgcttttcaggttcgagaattcagcggtacttca
gaggaacttgttttttatgaagaatgcggaaagtcttgtgcagacaggaaaaagaactta
gagcagacacaagtgcggttgcaagcagagtgtaaagagtacaagagaaaaagagagctt
gaaaagaatgagcgagaacaggtggaacgatggcaagaaaagatgcagaacatcatgatt
caggcagaaaaattatctgtagcatcagaacacagtacacggttgaaaacggagttggaa
gaaaagctgaaaggcattgatgaacaacagttgaagtcgcaaagacaaactttgatgaaa
gaaaagaagcagatacatgaaaccatagagaaagttcgaacggaattacaaaaaagtgta
gacgcttattccaaaatcagtacgaaagtatcggaatggaaacagtatcaaaaagaggag
acaagccgatatcgtgcagaaaaacaggactgggaaagaaagataacacaggaattttcc
gatatggaaacctatcgcaacaactgcatggaagaatccgtcttggaacaggaaaagaaa
caggtggaagagtttttggaagagtaccgtgtattaagtgtggaagtcaagaccttggaa
cagactttggaaagcaaaaccgcaatcgatattcaaccgttggaaaaagagatatattct
ctggaagaagtgcgtaaggaattacagaatacgaaagagaagctgcaacagcagtataaa
tccgttcacatgcttgagaacaagattcgtgaagtgttatcacatgaagaggaatatgca
ctaaaaagaatgaatcttgccaagttatatcaactgtgcagcggagaaaatccgatgaaa
gctactcttgaaacctatgttttgatgtatttctttgaagaagtgctgatgtatgcgaat
cagagattatataagatgacagacggtcagtataccctatatcgcaaagaggataacttc
aagggcggaggaaaaaacagaggattggaattagaaattttggataccaatgtaggaaaa
aaacgcagtacggcaatgctgtcgggcggagaaagctttttggcatcgcttgcgttggcg
ctcggattgtcggatgccattatgaatacggctggtcagattgaaattgataccttgttt
attgatgagggattcggaacattggatcaggacagattacagagtgcggtagattgtctc
ttagagcttgcgggaagaaatcggatgattggtattatttctcatgtagaagaactgaaa
tccacgattccgaataaaattattgtcacatatgaaaaagaaagaggaagcacactttca
ctgatgtattaa
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