Filifactor alocis: HMPREF0389_01735
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Entry
HMPREF0389_01735 CDS
T01663
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
faa
Filifactor alocis
Pathway
faa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0389_01735 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faa03021
]
HMPREF0389_01735 (rpoB)
03400 DNA repair and recombination proteins [BR:
faa03400
]
HMPREF0389_01735 (rpoB)
Enzymes [BR:
faa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0389_01735 (rpoB)
Transcription machinery [BR:
faa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0389_01735 (rpoB)
DNA repair and recombination proteins [BR:
faa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0389_01735 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADW16180
UniProt:
E8RK56
LinkDB
All DBs
Position
complement(1451813..1455547)
Genome browser
AA seq
1244 aa
AA seq
DB search
MPHPHPVKIGRKTRMSFSQIDEVAELPNLIELQLDSYNWFVNEGLREVFEEVFPIEDYTG
NIKLEFVDYKLENDSKYDVEESKERDVNYAAPLKVQVRLTVPDEDGSRIVKNETGDPVFL
GDFPLMTEKGTFIINGAERVIVSQLVRSPGVYYAQEIDKSGKQLISSTVIPNRGAWLEYE
TDSNDVVSVRIDRDRKQPITMLLRAFGYGTDEQIIQLLGDDERIQATLAKDNTNSREEGI
IEIYKKMRPGEPPTLESAESLLHMMFFDSKRYDLAKVGRYKFNKKLAISARAIGRVLAED
VVNPYTGELVMETGTKVTYQNAHLIDDCGCEYVYVQIDDTKSVKVIGNRFVDIHNFIDID
ISDLKIKQKVRYNILKEILDEATNDEELKDLIKRRKRELVPKHIVIEDIVASISYQFNLF
YGLGNVDDIDHLGNRRVRSVGELLQNQFRIGLSRMERVIRERMTVQDTMELTPNSLINIR
PVTAAIKEFFGSSQLSQFMDQNNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHYSHYG
RMCPIETPEGPNIGLINSLSVFAKINEYGFIESPYRVVDKENQRVTDEIRYLTADEEDLY
IRAQANEPLDENQCFVNDRVACRTTQGNLLLVEPKNVDFMDVSPKQVVSVATAMIPFLEN
DDANRALMGSNMQRQAVPLLRREAPVVGTAIEYRAAVDSGAVVVAKNDGVVEKVSARQVV
IRREDGEVDNYSLLKFKRSNQGTCINQTVIVNKGDVVKKGDAIADGPSTDLGEIALGRNC
LVAFMTWEGYNYEDAILINERLVKEDRLSSIHIEEYEAEARDTKLGPEEITRDIPNVGED
AIKDLDENGIIRIGAEVESGDILVGKVTPKGETEITPEERLLRAIFGEKAREVRDTSLKV
PHGESGIIVDVKIFRRENGDELAAGVNELVRCYIAQKRKINVGDKMAGRHGNKGVISRIL
PEEDMPFLPDGTPLEIVLNPLGVPSRMNIGQVLEVHMGLAAKKLGWNVATPVFDGANEQD
VFEALKQAGYPQDGKIQLQDGRTGEFFDGRVTVGYMYMMKLHHLVDDKIHARSTGPYSLV
TQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVQTYEAIIKGKNV
PEPGIPESFKVLIKELQSLCLDIKLLSEFDEEIKVAESQDEMTIEDHFHYVDEERDDMLI
EDLSEEDSELTNQFELDFEGEDEFSEEDDSILVEDIDLDDSLDF
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgccacatccacatcctgtgaaaattgggagaaagaccagaatgagtttttctcaaatc
gacgaagtagcagaacttccaaatctgatagagcttcaattagactcttacaactggttc
gtaaacgagggtttgagagaagtttttgaagaagtatttccgattgaagattataccgga
aatatcaagttggaatttgtcgattataaattggaaaacgactcaaaatatgatgtagaa
gaaagtaaagaaagagatgtaaactatgcagctcctcttaaagtgcaagtaaggttgaca
gtgccggacgaagacggttcgcgtattgtcaaaaatgaaacgggagaccctgtattctta
ggagattttccattaatgacagaaaaaggaacattcatcatcaacggagcggaacgtgtt
attgtaagtcaacttgttcgttctccgggagtgtactatgcgcaagaaattgacaagtcc
ggaaaacagttaatttcatcgacagtcattccgaatcgcggggcatggttggagtacgag
acagattctaatgatgtagtttccgttcgtatcgacagagatcgtaaacaaccgattacc
atgttgttgcgtgcgtttggatatggaacagatgaacagattatacagttactcggtgat
gatgaaagaatccaagcgactttggcaaaagataataccaactcgagagaagaagggatt
attgaaatctataaaaagatgcgtccgggtgaaccgcctacattagagagtgcggaatct
ttgttgcacatgatgttttttgatagcaaaagatacgatttggcaaaagtgggacgttac
aaatttaataagaaattagcaatttcagctcgtgcaatcggcagagtattggcagaagat
gtggtaaatccatataccggtgaattggtgatggaaacgggaacaaaagttacctatcaa
aatgcacatttgattgacgactgtggttgtgagtatgtatatgttcaaatagatgatacc
aaatcagtaaaagtaatcggtaaccgatttgtagatatccataactttattgatattgat
atttccgatttaaaaatcaaacaaaaagtaagatacaacatattgaaagaaattttggac
gaagcgacaaatgatgaagaattaaaagacttaatcaaacgcagaaagcgtgagttggta
ccgaaacatatcgtgattgaagacattgttgcatccatcagttaccaattcaacctgttc
tacggattaggaaatgtagatgatatcgaccacttgggaaatcgtcgtgttcgttctgta
ggtgagttgttgcaaaatcaattccgtatcggtttatccagaatggagcgtgtgattcgt
gaaagaatgaccgtgcaagataccatggaattgacaccgaacagtcttatcaacatcaga
cctgttacagcggcaattaaagaattcttcggttcttctcagctatctcaattcatggat
caaaacaatccgttggcagagttgacacataagagaagactttccgcattggggccgggt
ggtttgtcaagagagagagcaggatttgaggtgcgtgacgttcactattctcactatgga
agaatgtgtccgattgaaacgccggaaggaccgaacatcggtttgattaactccctgtct
gtatttgcaaaaatcaatgaatatggatttatcgaatcaccatatcgagtggtagataaa
gaaaaccaaagagtaacagatgaaattcgttatctgacagcagatgaagaagacttatat
attcgtgcacaagcaaacgaaccgctggatgaaaatcaatgttttgtcaatgatcgtgtt
gcttgtcgtaccacacaagggaacttgttgcttgttgaaccgaaaaatgtagatttcatg
gacgtttctccaaaacaagttgtttctgtagcaacggctatgattccgtttttagaaaac
gatgacgccaaccgtgccttgatgggatccaacatgcagcgtcaagcagtaccgttgtta
cgaagagaagcaccggttgtaggaactgcaatcgagtatcgtgcagcagtagattccgga
gccgtagtcgtagcaaaaaatgacggggtagtagaaaaagtttcggcaagacaggttgtg
attcgtcgtgaagatggtgaagtagataattactcactactgaaattcaaacgttccaac
caaggaacctgcattaaccaaacagtgattgtaaataaaggcgatgttgttaaaaaagga
gatgccattgcagacggtccgtctaccgaccttggagagatcgcacttggaagaaactgt
cttgtagcgtttatgacatgggaaggttacaattacgaagatgcgattttgattaatgaa
cgtttggtgaaagaagacagactgtccagtattcatattgaagaatatgaagcagaggca
agagataccaaacttggacccgaagaaattacaagagatattccaaatgtgggtgaagat
gcaatcaaagaccttgatgaaaacggaatcatccgcattggagctgaagtagaatccgga
gatattctggttggaaaagtaacaccgaaaggagaaactgaaatcacaccggaagaaaga
ctacttcgtgcaatctttggagaaaaagcaagagaagtaagagacacctctttgaaggtg
cctcacggagaatccggaattatcgtggatgtcaaaattttccgtagagaaaacggagat
gagctggcagcaggagtaaacgagttggttcgttgttatattgcacaaaaacgtaaaatc
aacgttggagataaaatggcgggacgccatgggaacaaaggtgttatttcaagaatttta
ccggaagaagatatgccgttcttacctgacggaacaccgcttgaaattgtgttgaatccg
cttggggtaccatctcgtatgaatatcggacaagttttggaagttcatatgggattagca
gcaaaaaaattgggatggaatgtggcgacaccggtatttgacggcgcaaacgaacaggat
gtatttgaagctttgaaacaagccggatatccgcaagacggaaaaattcaactacaagac
ggtagaacaggggaattctttgatggaagagttaccgtgggatatatgtatatgatgaaa
cttcaccacttggttgatgacaaaatccatgcacgttccacaggaccgtactcccttgtt
acacaacaaccgctgggagggaaagcgcaattcggcggacaacgttttggagaaatggaa
gtttgggcattggaagcctatggtgcggcacataccctacaagaaattttgacagtgaag
tcggatgatgtggttggtcgtgtgcaaacctatgaggcaatcatcaaaggaaagaacgta
ccggagcccggaattccggaatccttcaaagttttgattaaagaactacaatctttatgt
ttggatattaagttattatccgagtttgatgaagaaattaaagttgcagaatctcaagac
gagatgacaatcgaagatcatttccactatgtagatgaagaaagagacgatatgcttatt
gaagatttatcagaagaagattccgaactgacaaatcagtttgagttagattttgaggga
gaggatgaattttcggaagaagatgatagtatattagtagaagatattgatttagatgac
agtctggatttttag
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integrated database retrieval system