Frateuria aurantia: Fraau_1144
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Entry
Fraau_1144 CDS
T01773
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fau
Frateuria aurantia
Pathway
fau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fraau_1144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fau03019
]
Fraau_1144
03400 DNA repair and recombination proteins [BR:
fau03400
]
Fraau_1144
Enzymes [BR:
fau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fraau_1144
Messenger RNA biogenesis [BR:
fau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fraau_1144
DNA repair and recombination proteins [BR:
fau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fraau_1144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
ResIII
TPR_9
Motif
Other DBs
NCBI-ProteinID:
AFC85603
UniProt:
H8L409
LinkDB
All DBs
Position
1236101..1237909
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AA seq
602 aa
AA seq
DB search
MSSTARSILQSVFGYTAFRGQQQAVVEHVAEGGDALVLMPTGGGKSLCYQVPALLRSGLG
VVVSPLIALMQDQVDALRQLGVAAAYLNSSLDAEAQRAVERQMMSGELQLLYVAPERLLS
PRLLAMLERIEIALFAIDEAHCVSQWGHDFRPEYRELAELQRRFPQVPRIALTATADPRT
REEIIERLGLQQARQFLSSFDRPNIRYRVGQRQQGRKQLEAFLADHRGDSGVIYCLSRKK
VDETAGWLQAMGFNALAYHAGLEAALRSEHQQRFLREDGVVMVATVAFGMGIDKPDVRFV
AHLDLPRSIEGYYQETGRAGRDGLPADAWMVYGLNDVVTMSQMIAQSESADDRKRIERQK
LEALLGYAEATTCRRVLLLAAFGETSDGPCGNCDNCLEPPATWDATVCAQKALSCVFRSG
QRFGSGHVIDILRGHATARVSQLGHDKLSTFGIGADLDEKQWRSIFRQVLALGLLEADGQ
SHGTLRLTEASRKVLTGGEQVWLRKELQPKAARRRDSQLVTGASVGIEAYEEPMWNALKG
LRSQLAKQHGVPPYVIFHDATLLAMLRALPADETEMGSISGVGEAKLARYGRDFLAVINA
AE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagttctactgcccgttccattttgcaatccgtgttcggctataccgcgtttcgcgga
cagcagcaggcggtggtcgagcatgtcgccgaaggtggtgatgcgctggtgctgatgccg
accggcggcggcaagtcgctgtgctatcaggtgccggccttgttgcggtcaggtcttggc
gtggtggtgtcaccgctgattgccttgatgcaggatcaggtcgatgcactgcgccagctg
ggcgtggccgcggcctatctcaattccagccttgatgccgaagcgcagcgggcagtcgag
cggcagatgatgagcggcgaactgcagctgctctatgtcgcgccggagcggctgctgagc
ccgcgcttgctggcgatgctggaacggatcgagattgccttgttcgccatcgacgaagcc
cattgcgtatcgcaatggggccatgatttccggcccgaataccgggagctggccgaactg
cagcgccgctttccgcaggtgccgcgcattgccttgaccgccaccgccgatccgcggacc
cgcgaagagatcatcgagcgtctgggcctgcagcaggcacgccagttcctgtccagtttc
gatcgccccaatatccgttaccgggtcgggcagcggcagcaggggcgcaagcagctggaa
gcctttctggccgatcatcgcggcgacagcggggtgatctactgcctgagtcgcaaaaag
gtggacgaaacggcaggctggctgcaggccatgggcttcaatgccttggcctaccatgcc
ggcctggaggcggcgctgcgcagcgagcaccagcagcgttttctgcgcgaagacggagtg
gtgatggtggccacggtggctttcggcatggggatcgacaaacccgacgtccgttttgtt
gcccacctggatctgccgcgcagcatcgaaggctattatcaggaaaccggtcgtgccggt
cgtgacgggctgccggcggatgcctggatggtctacggtctcaatgacgtggtcaccatg
agccagatgatcgcgcagtcggaatcggcggatgatcgcaagcggatcgagcggcagaaa
ctggaggccttgctgggttatgccgaagcgaccacttgtcggcgcgtgctgttgctggcg
gcttttggcgagaccagcgacgggccttgcggcaattgcgacaactgcctggagcccccg
gcgacctgggatgccacggtctgtgcacagaaagccttgtcctgcgtgttccgcagcggc
cagcgtttcggctccggccatgtgatcgacattctgcgcgggcatgccaccgcccgggtc
agccagctggggcatgacaagctcagcaccttcggtatcggtgctgatctggacgagaag
cagtggcgctcgatcttccgccaggtactggccctgggtctgctggaggccgacggccaa
tcccacggcaccttgcgtctgaccgaggctagccgcaaggtactgaccggcggcgagcag
gtctggctgcgcaaggagctgcagccgaaagcggcgcggcgcagggacagtcagctggtg
acgggcgccagtgtcggcatcgaagcctacgaggagccgatgtggaatgccctgaagggc
ttgcgcagtcagctggccaaacagcacggtgtgccgccctacgtcattttccatgacgcg
accctgctggcgatgcttcgagccctgccggccgacgagaccgagatgggctccatcagt
ggcgtcggcgaggccaagctggcccgctacggacgggatttcctggccgtgatcaacgct
gccgaatag
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