Ferrimonas balearica: Fbal_1387
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Entry
Fbal_1387 CDS
T01318
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fbl
Ferrimonas balearica
Pathway
fbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fbal_1387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fbl03019
]
Fbal_1387
03009 Ribosome biogenesis [BR:
fbl03009
]
Fbal_1387
Enzymes [BR:
fbl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Fbal_1387
Messenger RNA biogenesis [BR:
fbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Fbal_1387
Ribosome biogenesis [BR:
fbl03009
]
Prokaryotic type
rRNA processing factors
Fbal_1387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADN75591
UniProt:
E1SMQ2
LinkDB
All DBs
Position
complement(1557244..1560543)
Genome browser
AA seq
1099 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPIKEIAREYFADGAPMAGRPNIKEVIKEGQEVIVQVDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERSELKDALSKLQVPQGMGLIVRTAGVGKAAEEL
ADDLRVLLHHWDAIKQAADSRPAPILIHQESNVIVRAIRDYLRSDIGEILIDHPRIFEQA
KEHISLVRPDALSKLKQYQSEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTA
VDINSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMGPVRHQREVEN
RLRDAVRQDRARVQIGRISRFGLLEMSRQRLRPSLGESAAHLCPRCNGQGTIRGTESLAL
SILRLMEEEAIKENTAQIEAQVPTDVAAFLLNEKRKAIRIIEQRHKVEVYVIPHPHMETP
NYTVVRHRKDDTISEASYSLVERPEATLYEPRKLERQQGDKPVLQGLSAPKAEAEVKAEK
PAEKAPAPAKPKRQPKAEPVAAAKPGLLARIGAAIKGLFSSEEAEQEQPKEKKSERGGQR
RQRGERGERGERQDRNRRNRKRGERSEQDEQGKGEANKERRRNRRDRRGDRNQDEPRQDR
AAKSGKDNREERRDDSRREERREESRREERRDDSRREERRERRKKEPRQDKVEKVEKVEA
EAEAKTESRREEQVEQRRERRQRRQLERSVRSQPIKRDAVEEEAQVAAPVTEVAAEQPAV
APQPAAEAPVQTAVAAEGNGERREESELTLTDNERNAHRRSRRSPRHLRAAGQRRRRQTR
DDVEQGSEGEMPEQQAQRDPVTARYPEATDMAAPAEEQLSIPLDQPEVAEAPAAETVADE
AKAEVTEAPATEAVAEEAKADATEAPAAQAVAEEAVVEEAKAEVTEAPAAQAVAEEAVVE
EVKTEVTEAPAEEVVAEEVKAEVSEAPAEEAVAEEVKAEVTEAPAEEVAAEEVKAEVTEA
PVETAAEEAAPAPVATAAPRNGLLDLSRAAQAAMATPASTAPEMPLKEVTVPQYEAKAND
FALNRYRMMVNANMTRPVE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcaatctgaagagttgcgtgttgctctggtagat
ggccagcgcctctatgatctggatatcgaaagtcccggtcacgagcagaaaaaagccaat
atctacaaaggcaaaatcacccgcgtagaaccctccctcgaagctgccttcgtcgactac
ggcgctgagcgtcacggcttccttcccatcaaagagattgcccgcgaatactttgctgat
ggtgcgccgatggccggtcgccccaacatcaaagaggtgatcaaagagggccaggaagtg
atcgtccaggtcgacaaagaggagcgtggtaccaagggcgcggccctgaccaccttcatc
agcctcgccggttcctacctggtactgatgccgaacaacccccgcgctggtggtatctcc
cgccgcatcgagggtgacgagcgctctgagctgaaagacgccctgtccaagctgcaggtg
ccgcaaggcatgggcctgatcgtccgtaccgcgggcgttggcaaagccgctgaagaactg
gcggacgacctgcgcgtgctgctgcaccactgggacgccatcaagcaagccgctgacagc
cgcccggcgccgatcctgatccatcaggaaagcaacgttatcgttcgcgccatccgtgat
tacctgcgcagcgacatcggcgaaatcctcatcgaccacccgcgcatcttcgaacaggcc
aaagagcacatcagcctggtgcgcccggacgccctgagcaagctcaagcagtaccagagc
gaagtgccgctgttcacccactaccagatcgaaacccagattgagtccgctttccaacgg
gaagtgcgcctgccgtctggtggttccatcgtgatcgatccgaccgaagcgctgaccgcg
gtggacatcaactccgcccgcgccaccaaaggcggcgacattgaagaaaccgcactgcag
accaacctggaagcggctgacgagatcgcccgccagctgcgcctgcgtgacctcggtggc
ctggtggtaatcgactttatcgatatgggcccggtacgccaccagcgtgaagtggaaaac
cgtctgcgtgacgccgtccgtcaggaccgcgcccgcgttcagatcggtcgtatctcccgc
ttcggtctgttggagatgtcccgtcagcgcctgcgcccgtccctgggtgagtccgctgcc
cacctgtgtccgcgctgtaacggccagggcaccatccgtggcaccgagtctctggcgctc
tccatcctccgcctgatggaagaggaagcgatcaaggagaacaccgcccagatcgaagct
caggttccgaccgatgtggccgcgttcctgctcaacgaaaagcgcaaagcgattcgcatc
atcgagcagcgccacaaggtggaggtgtacgtcattccgcacccccatatggaaaccccg
aactacaccgtggttcgccaccgcaaagacgacaccatcagcgaagccagctacagcctg
gtagagcgtccggaagcgactctgtacgaaccgcgtaagctggaacgtcagcagggcgac
aagccggtactgcagggtctgagcgccccgaaagcggaagccgaagtcaaagccgagaag
ccggccgagaaagcccctgctcctgccaagccgaagcgtcagcccaaagctgagccggtt
gccgccgccaagcccggcctgctggcccgcattggtgctgccatcaagggcctgttcagc
agcgaagaagccgagcaggaacagccgaaagagaagaagtccgagcgtggtggccaacgt
cgccaacgtggcgagcgtggcgaacgcggcgagcgtcaggaccgtaaccgtcgtaaccgc
aagcgcggcgagcgttctgagcaggacgagcaaggtaaaggcgaagccaacaaagagcgc
cgccgcaaccgtcgcgaccgtcgtggtgaccgcaaccaggatgagccgcgtcaggatcgt
gccgccaagtccggtaaggacaaccgcgaagagcgtcgtgacgactctcgtcgtgaggag
cgtcgtgaagaatcccgtcgtgaagagcgccgtgatgattcccgtcgcgaagagcgccgc
gagcgtcgtaagaaagagccgcgtcaggacaaggtagagaaagtcgaaaaggttgaggcg
gaagccgaagccaaaaccgaatctcgccgcgaagagcaggttgagcaacgccgcgagcgt
cgtcaacgccgtcagctggagcgttccgttcgcagccagccgatcaagcgtgacgccgtt
gaggaagaagcccaggttgccgccccggtaaccgaagtggctgctgagcaaccggctgtc
gccccgcaacccgctgccgaagcgccggtacagaccgccgtggcagccgaaggcaatggc
gagcgtcgcgaagagtccgaactgaccctgaccgacaatgagcgcaacgctcaccgccgc
tctcgccgcagcccgcgtcacctgcgtgccgctggccagcgtcgccgtcgccagacccgt
gacgacgttgagcagggcagcgaaggcgaaatgccggagcagcaggctcagcgtgacccg
gttacggcccgttacccggaagccactgacatggctgcaccggcggaagagcaactgagc
atcccgctggaccagcctgaggttgccgaagccccggccgcagaaaccgttgctgacgaa
gccaaagcggaagtgaccgaagccccggcgacagaagccgttgctgaagaagccaaagcg
gacgctaccgaagccccggctgcacaagcggttgctgaggaagcggttgttgaagaggcc
aaggccgaagtcaccgaagccccggctgcacaagccgttgctgaagaagcggttgttgaa
gaggtaaagaccgaagtgaccgaagccccggctgaggaagtggttgctgaagaggttaaa
gccgaagtgagcgaagccccggctgaggaagcggttgctgaagaggttaaagccgaagtg
accgaagccccggctgaggaagtggctgctgaagaggtaaaggccgaagtgactgaagct
ccggtggaaaccgccgcagaggaagccgccccggccccggtcgccaccgcagcaccgcgt
aacggtctgctggacctgagccgcgcagcccaggctgctatggcgactccggcaagcacc
gccccggagatgccgctgaaggaagtgaccgtgccgcagtacgaagccaaagccaatgac
ttcgcactgaaccgctaccgcatgatggtgaacgccaacatgactcgcccggtcgagtaa
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integrated database retrieval system