Francisella cf. novicida Fx1: FNFX1_0697
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Entry
FNFX1_0697 CDS
T01937
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fcf
Francisella cf. novicida Fx1
Pathway
fcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNFX1_0697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcf03019
]
FNFX1_0697
03009 Ribosome biogenesis [BR:
fcf03009
]
FNFX1_0697
Enzymes [BR:
fcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNFX1_0697
Messenger RNA biogenesis [BR:
fcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNFX1_0697
Ribosome biogenesis [BR:
fcf03009
]
Prokaryotic type
rRNA helicases
FNFX1_0697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEB27645
LinkDB
All DBs
Position
709851..711560
Genome browser
AA seq
569 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNIDLKSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV
SDECQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQL
DSEELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRF
DKADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLV
DLPANLSPKVINHLKKVWVAGKKLNLTAQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaatcaagatattgtagat
actgttattaaactaggatatgaaaatccaacacctattcaacagtatgctattccatat
atcttatcgggtagagatgtgctaggtcaagcacaaacgggtacgggtaaaacagcagct
tttgcattaccattgataaataatattgatttaaaatctagagatagagctccacaagtt
ttggtattagctcctacaagagagttagctatacaagtggcggagcagtttgaagctttt
gctaaaaatgtacctaatttagatgttgcttgtatttatggtggtcaagaatatggttct
caaataagagcacttaagcaaggtgtaaaagttgtagttggtacgactggtcgagtaatg
gatcatatcgagaaaggtacattacaacttgataatcttagagcattagtattagatgaa
gcagatgagatgctcagaatgggttttattgatgatgttaaatttgtcttaagtcatgtt
tctgatgagtgtcaaaggttacttttctcagcaacaattcctactgatattgctgatatt
atcgaagagtatctaagaaatccttgtaagatacaagtaaaggctaagacaaaaactgcc
aacacagttacacaaaaatttatcgtaatcaaaggctttagaaagatagatgctttagat
agattacttgagaccgaagaaactgatggtgttattatctttgttaagactaagacaagt
actatagaagtaacagataatttaaaagctcttggttataaagtagcagctataaatggt
gatatgcaacaatcacagcgtgagtatattgttgatcaattcagaagtgctaaatcggat
atcctcgttgctacagatgtagtagctaggggtatagatcttgaacgtattagtcatgtg
attaactatgatatgcctaatgatactgatacatatgtacatagaattgggcgtacaggt
agagcagggcgtgaaggcacgtcaatttctttagtacctcttaaagagatgagattttta
cgtactttagagaggtttacaggttcaccaatgcaagaagtatttatgccaagtgctaaa
gatttagctcaaagcagggtagaacactttaaagctagaataatctcagcattggataaa
aataagtctttagataagtataaagaaattattacaagtattcgtgatgaattacagtta
gactcagaagagcttttagctggacttacattactagctcaaggtaagaaaactttcttc
ccaagagaaattcaagctaaagaagaaaaaccagctcgtgataatagaaattctagagat
ggtagaagaaatgaaagatttgagcgtagaaatgatcaaggtgatagaactaaacgtttt
gataaagcagatagaaagccacgtcgtgctgtaaatatcgatctaactacttataagtta
gatgttggtcgtgataatgatgttcaagcgcgaaatattgttggtgctatagctaatgag
ggtaatatcgatagcaaacatatctgtaatatctctattcaaaaagattatacattagtt
gatttaccagcaaatctttcaccaaaagtgataaatcatctaaaaaaagtctgggttgct
gggaagaagttaaatcttactgctcagtaa
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