Flavobacterium columnare: FCOL_08320
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Entry
FCOL_08320 CDS
T01653
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fco
Flavobacterium columnare
Pathway
fco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FCOL_08320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fco03400
]
FCOL_08320
Enzymes [BR:
fco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCOL_08320
DNA repair and recombination proteins [BR:
fco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FCOL_08320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEW86479
UniProt:
G8X8M8
LinkDB
All DBs
Position
1926877..1930230
Genome browser
AA seq
1117 aa
AA seq
DB search
MSTDYIKQLFSNQSKINQISALLSGDNKIHLKGLLGSSLSFIIEALFEKADKTFLLLANE
KEEAAYLLNDLEQLIGAKDVLFYPSSYRRPYQIEETDNANVLLRSEVLNRINSRKKPCVI
VSYPEAIFEKVVTKKELDKNTLKIATGDKVSIDFINEVLFEYDFKRVDFITEPGEFSVRG
GILDVFSFSNDNPYRIEFFGNEVDSIRTFDVSTQLSIETKTKITIIPNFENKLLEEKRES
FLEYINPKTSIFIQNTDLLLNNLDKLFAKAEESFEKLSKDLKHATPNELFVNQETFIKQA
LHFSVVEISTKATFKIQNTFEFYIKPQPSFNKQFDLLMEDLKNNRQNNLKNYLFCANEQQ
AKRFHDIFESMDEEQHEHFVKDYETIVLPLYQGFIDEENQIACYTDHQIFERYHKFSIKN
GYAKKQNITLKELNSLTVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLIYADNDIVYV
SIHSLHKISKYNGKDGTPPKIYKLGSGAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGY
AFAPDSYLQHELESSFIYEDTPDQLKATQDVKADMENERPMDRLVCGDVGFGKTEVAIRA
AFKAVDNSKQVAILVPTTILAYQHFRTFKSRLKDLPVNISYLNRFRTAKQKSEILKDLES
GKLDIIIGTHQLVNKNVKFKDLGLLIIDEEQKFGVNVKDRLKTIATNVDTLTLTATPIPR
TLQFSLMAARDLSVINTPPPNRYPIETQVIGFNEEIIRDAISYEIERGGQIYFINNRLEN
IKEIAGMIQRLVPNAKVGIGHGQMEGKQLEEIMLSFMEGEFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEEARKRIQALTQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKIMQEAIEELKENEFKDLYPEESNI
ETKEYVKDLQIDTDFELLFPDEYINSVTERLSLYNELAIIKTEEKLQEYQKQLEDRFGKL
PKSGLALLDSLRLKWKATHLGIEKLVLKQGKLVCYFVGDQQSDYYQSSRFHKVLQFVQQN
ANLCKMKEKETKNGLRLLLTFEHVKSIKKALELIEMI
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaccgattatataaaacagctattttccaatcaatctaagatcaatcaaatatcc
gctttactaagtggcgacaacaagattcatcttaaaggtttgttaggctcctccctatca
tttattatagaagccttatttgaaaaagcagataaaacttttttattattagctaatgaa
aaagaagaagctgcttatttattaaacgatttagaacaattaattggcgcaaaagatgtg
ctattttatcccagctcatacagaagaccttatcaaattgaagaaactgataatgcaaat
gtattgcttcgatcagaagtattaaaccgaattaattctaggaaaaaaccttgtgtcatc
gtttcctaccctgaagctatttttgagaaagtggttaccaaaaaagagttggataaaaac
actttaaaaattgcaacaggcgataaggtttcaattgattttattaacgaagtactcttt
gaatacgattttaaacgcgttgatttcattacagaacctggtgaattttcggttcgtgga
ggtattttagatgtattttctttttccaatgataatccgtatcgaattgaattttttggc
aacgaagtagacagcataagaacctttgatgtaagtacacaattatctattgaaactaaa
actaaaattacaataattcctaattttgaaaataaattattagaagaaaaacgcgaaagc
tttttagaatacattaatcctaaaacttctatttttatacaaaatacggatttattatta
aacaatttggataaactttttgcaaaagcagaagaaagttttgaaaaattatctaaagat
cttaaacacgctactcctaatgaattgtttgtaaatcaagaaacatttatcaaacaagca
ttacacttttcagtagtagaaatatccactaaagctacttttaaaattcaaaatactttt
gaattttatataaaaccacaaccttcttttaataaacaatttgatttattgatggaggat
ttaaaaaataatcgccaaaataatttaaaaaattatctattttgtgctaatgaacaacaa
gcgaaacgtttccacgatatttttgagtcgatggatgaagaacaacatgagcattttgta
aaagattatgaaaccattgtactccctttataccaagggtttattgatgaagaaaatcaa
atagcctgttatactgaccatcaaatttttgagcgttaccataaattttctattaagaat
ggctatgctaaaaaacaaaatattacattaaaagaattaaattctttaacggtaggtgac
tatgtaacacacatagatcatggtatcggaaaatttggtggtttacaaaaaattcaggtt
gaaggcaaaacacaagaagctattaagctaatttatgctgataatgatattgtatatgta
agcattcattcattacataaaatatctaaatacaatggcaaagatggtactccacccaaa
atatataaattaggttcaggtgcttggaaagctttaaaacaaaaaacaaaagcccgtgtt
aaacacattgcatttaacttaattcaactatatgctaaacgccgtttagataaaggatat
gcttttgcgcctgatagttatttacaacacgaactagaaagttctttcatttatgaagat
acacccgaccaactaaaagcaactcaagatgtaaaagcggatatggaaaacgaacgtcca
atggatcgtttagtttgtggcgatgtgggatttggtaaaactgaagttgctattcgtgcc
gcttttaaagcagtagataatagtaaacaagtagctattttagttccaactacaatcttg
gcatatcaacactttagaacatttaaatctcgtttgaaagacttacctgtaaatattagt
tatctaaatcgttttagaacagctaaacaaaaatctgaaattctaaaagatttagaatct
ggtaaactggatattataattggaactcatcaattagtaaacaaaaatgttaagtttaaa
gatttaggtttgctcatcattgatgaggaacaaaagtttggtgtaaacgtaaaagatagg
ttaaaaacgattgctaccaatgtagatacattaacactaacagcaacacctattcctaga
acattacagttttcattaatggcggcaagggatttatcagtaattaacaccccacctccc
aatcgatatcctattgaaacacaggtaataggatttaatgaagaaatcattcgagatgct
atttcgtacgaaattgaaagaggaggtcaaatatactttatcaacaatcgtctcgaaaat
atcaaggaaattgctggaatgatccaacgtttagtacctaatgccaaggttggtattggt
catggacaaatggaaggaaaacaattagaagaaattatgctttcatttatggaaggcgaa
tttgatgttttagttgctaccaccataattgaaagtggtctagatgtaccaaatgcgaac
acaattttcatcaacaatgccaataactttgggttatctgatctacatcaaatgcgtggg
cgtgtaggacgaagtaacaaaaaagccttctgttattttataacacctccttattccgta
atgactgaagaagctcgtaaacgcattcaggcattgacacagtttagcgaattaggcagt
ggttttaatattgcaatgaaagacttagaaattcgaggtgctggcgatttattaggtggt
gaacaaagcggtttcatcaatgaaattggttttgaaacctatcaaaaaatcatgcaagaa
gccatagaggaattaaaagaaaacgaatttaaagatttatatcccgaagaaagcaatatt
gaaacgaaagaatatgtaaaagatcttcaaattgatactgattttgagttactttttcca
gatgaatacataaacagcgtaactgagcgtttaagcttgtataatgaattggctattatt
aaaaccgaagaaaaactacaagaataccaaaaacaactggaagaccgttttggcaaatta
cctaaatccggtttagccttattagatagcttacgtttaaaatggaaagcaacgcattta
ggaattgaaaaattagtattaaaacaaggtaaactggtttgttattttgtaggtgaccaa
caaagtgattactaccaatcttctcgttttcacaaggtattacaatttgtacagcaaaac
gcaaatctttgcaagatgaaagagaaagaaactaaaaatggacttcgtttgctattgact
tttgaacatgtaaaatcaattaaaaaagcattggaattaattgaaatgatttaa
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