Fragilariopsis cylindrus: FRACYDRAFT_238190
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Entry
FRACYDRAFT_238190 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FRACYDRAFT_238190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fcy03041
]
FRACYDRAFT_238190
Enzymes [BR:
fcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FRACYDRAFT_238190
Spliceosome [BR:
fcy03041
]
Complex C
Other components
Step II factors
FRACYDRAFT_238190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
nSTAND3
AAA_22
ATPase
AAA_16
T2SSE
ABC_tran
TrwB_AAD_bind
NACHT
AAA_7
DEAD
Motif
Other DBs
NCBI-ProteinID:
OEU17765
JGI:
238190
UniProt:
A0A1E7FIA2
LinkDB
All DBs
Position
Unknown
AA seq
1061 aa
AA seq
DB search
MSSSSSSSSRLTSLLPLTGGGLQPKKNTDSGSGSSSGDGKSLLGLDRLAAEKRSEKEQQQ
QQQGASKPLSSSSSSSLFAKKKNSNNNHRSKNYRKDSETPSHGGGLNTNAVQRAHRQSMP
QQRRRHDNNNEDDRSSRQQQQYQQHSGSGSDHKRKRRGGDDNDDDFGRSNSDRRMDRDNN
NDNNRRGSDNSQGSSRSYGNNNDHNNDRHRRIDNSNSQRRQGGNDYPNRRPPSNNNHNIN
KNHGSMPPPASRGPGTPSTHASTLSSSTASRSRRGDGRGDAPTPIMSRPSSVQRSNNNSN
NSNNNNGRRNDTGNRMASSSNARSRSDWDAETPIQGPRDGDSSPIQPIGGEDEYDSDFDR
EFYDDEEDGRYVIDQSAVDGGQDMGRFLFENSKTKAREADMEKRRRQQGPMNSHTQQQQQ
PRSERFNAKKSALQADQEAWEESRLLSSGAAVRSSIDLDSEALNNEKDMSRVTLLVHQVK
PPFLSDGRVSFSTVREAVPTVKDASSDFAKMSREGSATLRYIRANKDKNAMRQKFWELGG
TKMGNAMGVKKTKKVGNDGEGNNDDEDENGEIDYKKSSGFAQHVKKKANGEDDNTKVSTF
AKTKTIREQREFLPVFSVRDELLNVIRENSCVVIVGETGSGKTTQLTQFLMEAGYGKYGL
IGCTQPRRVAAMSVAKRVVARRSDLKLIVTSATLSSDTFSNYFGGVPVFRIPGRTFPVEA
YYAKGVQEDYVMAAVKQTLQIHFNSPPGDILIFMTGQEDIEGTSLDNTGDLTSMGRRMVE
FPLDPPLSKMLLFAHEKERCSTEVLIIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESD
HLTLLNVYQRAKQYRFDSEWCTKHFIHSKGIRKAREIHAQLLDLMKQQKLEPKSSGGSWD
VVRKAICSAYFYNSSKIKGIGDYINMLNGIPCSLHPSAALFGLGYSPDYVCYHELISTSK
EYMSCVTAVEGEWLAELGPMFFSIKESFETTLRRRHEKKLEQVKMMKEMDDKEAKNDEEK
KSKVSKKKEQSTSRNRSAVATPGRAGSTPRFAPRSRGRLGL
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcttcttcttcgtcgtctcgactgacgtcgctcttgccattgacgggtggg
ggtttacaaccaaagaaaaataccgacagtggcagcgggagtagcagcggcgatggaaaa
tcattgctgggactagatcggctagcggcagaaaaacgttctgaaaaggagcaacaacaa
caacaacaaggagcgtcaaaacctttatcatcatcatcttcttcttcattgtttgcaaag
aagaagaatagtaacaataatcatcgtagtaaaaactatcgaaaagacagtgaaactcca
tcccatggtggtggattgaatacaaatgccgttcaacgagctcatcgacaatcgatgcca
caacaaagacgacgacatgacaataataatgaagatgatagatcatcaagacagcaacaa
caataccaacaacattccgggagtggtagtgatcataaacgaaaacggagaggcggcgac
gacaatgacgacgactttggtagatcgaatagtgatcgacggatggatcgtgataataat
aatgataataacagaagaggatccgacaacagccaaggatcatcacggagttatggcaac
aacaatgatcataataatgatcgtcatcgccgtattgataatagtaacagtcaacgacgt
caaggaggaaatgattaccctaatagacgaccaccatccaacaataaccacaatattaat
aaaaatcatgggagcatgcctcctccggcatctcgtggaccagggacaccttccactcac
gcatcgacgttgtctagtagtacagcttctagatcaagacgaggtgatggtagaggagac
gctcctactcccataatgtctcgtccatcctcggttcagagaagcaacaacaatagtaac
aatagcaataacaataatggaagaagaaacgatacgggcaatcgaatggctagtagcagc
aacgcacgatctcgttctgattgggatgctgaaacacccatacagggacctcgagacggc
gattcttcccctattcagcccattggtggtgaagacgaatacgacagtgactttgatcgg
gaattctacgacgatgaggaagacggtcgatatgtaatcgatcaatcggcagtagatggt
ggacaagatatgggaaggttcctttttgaaaattctaaaacaaaagccagagaggcagac
atggaaaagcgtcgtcgacagcaaggtccaatgaacagccacactcaacaacagcaacaa
ccacgttctgagcgttttaatgcgaaaaaatcagcgttacaggccgaccaagaagcttgg
gaggaaagccgtttgttgagtagtggagctgccgtgcgatcgtcaatagatttagattcc
gaagcattgaacaatgaaaaggatatgtctcgagtgacgttgcttgttcatcaggtcaaa
ccaccctttttatcggacggtagagtctccttttcgacagtccgagaggcggttcctaca
gtaaaagatgctagttctgattttgccaagatgagtcgggagggctcagctacattgcga
tatatacgagccaataaggataaaaatgctatgcgacaaaaattctgggaactaggtggg
actaaaatgggtaacgctatgggtgtaaaaaagactaaaaaagtaggtaatgacggagaa
ggtaataatgacgacgaagatgagaacggagaaatcgattataagaagtcatcgggattt
gcccaacacgtaaagaaaaaagcgaacggggaagacgacaacacgaaagtttcaacgttt
gccaaaactaagactatccgtgagcaacgtgaatttttaccggtattttctgtccgggac
gagttactaaatgtcatccgcgaaaacagttgcgttgtgatcgttggagaaacaggaagt
ggaaagacaactcaattgacccaatttttaatggaggcgggttatggaaagtacggattg
ataggatgtactcaaccaagacgtgtagctgcaatgagcgttgctaagcgtgtggtggcg
agacgttccgatctgaaattgatcgttacgagtgcaacgctgagctcggacactttcagt
aactattttggaggcgttcctgtttttcgaattcctggaaggacatttcccgttgaggct
tactatgcaaagggtgtccaagaagactacgtcatggctgctgttaagcaaacacttcaa
attcacttcaatagtcctcctggagatattctaatttttatgactggtcaagaagatatc
gaagggacttcactggataatacaggagatcttaccagcatgggcagaaggatggtggaa
ttcccactggatccaccattgagcaagatgttgttgtttgcacacgaaaaagaacgctgt
tcgacggaagttttgatcattgttagtatgttgagcgtaccgagtgttttctttagacct
aaagacagggcagaggaatcagatgcggcccgagaaaagtttttcgttcctgaatccgac
cacttaactctattgaatgtctatcaacgggccaaacagtatagatttgattctgaatgg
tgtacaaagcacttcattcattccaagggcattcgtaaggctcgagaaattcatgcacag
ctcctggatctgatgaagcaacagaaacttgaaccaaaaagtagtggtggatcatgggac
gttgtgcgaaaggccatttgctcagcgtacttttacaatagctcaaagattaagggtatc
ggagactacataaatatgctgaatggtatcccttgctctctccacccatcggctgcgctg
tttggactcggatattcacccgattacgtgtgttaccatgaattgatcagtacatccaag
gaatacatgtcatgcgtcaccgctgttgaaggcgaatggcttgcagagttgggtcctatg
ttcttctcgatcaaggaatcgttcgagaccacgttacgtcgtcgacacgagaagaagtta
gagcaggttaaaatgatgaaagaaatggatgataaggaggctaagaacgacgaagagaaa
aaaagtaaagtatcgaagaaaaaggagcagagcacatcgagaaaccgatcggcggtggct
acacctggacgagctggttccaccccgagatttgctccgagatcgaggggaagacttgga
ctctag
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integrated database retrieval system
