KEGG   Candidatus Fluviicola riflensis: CHH17_05575Help
Entry
CHH17_05575       CDS       T05019                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
flu  Candidatus Fluviicola riflensis
Pathway
flu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:flu00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    CHH17_05575 (ligD)
Enzymes [BR:flu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CHH17_05575 (ligD)
DNA repair and recombination proteins [BR:flu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CHH17_05575 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ASS48214
LinkDB All DBs
Position
complement(1341507..1344095)
Genome map
AA seq 862 aa AA seqDB search
MALKLYRKKRNFKQTPEPSTGKEKPSVALTFVVQRHDASHLHYDFRLEMEGVLKSWAVPK
GPSMKAGERRLAVHVEDHPLAYGKFYGEIPKGNYGAGIVEIWDNGTYTPIQPEKGTSAEK
QLLRQYAKGDLKFVLKGKHLNGAFALVRMNDGTDKNWLLIKKSDEHAVKSYTISEIDPVK
AHKKKEPDPENEIQPVIPTQEPEEPVEQEDTKTDINHAWSHLKKPMLATLAKTHNDHPDW
LYEPKYDGYRAITKISNGKVEMVSRNGNSFNKAYETLLPELERFEDDLILDGEIVIENRK
GISNFQLLQNYTTTRKGILRYYVFDLLYLNGHSITQLPFIQRRELLEAVFTKVKLEHIQP
SPIVKEKGEELMKRLTKMGYEGVIAKESSSRYFPGARSDAWLKLKNRQSLEAIICGYTAP
QNSRKFFGSLILGICNNEKLVYIGNCGSGFTDTSLKELHVQFEKLKTAKSPFDPVPKMTG
QKGKPTWIKPQLVCNIEFANWTEDKHLRVPVFMGLRTDKKASETMKNNDTQPDIKTGKSL
KDGRKTASEAKKTEDSDQEIRISGKKLKVTNRNKVYFPESDITKGDLIDYYRKISPFILP
YLKKRPQSLNRHPNGITKPGFYQKDMDTEQIPEWVHTEKQYSKSNDEYLDYLICDNEATL
VYMVNLGCIEINPWHSLYDRPDYPDYMIMDLDPGNIGFKEVVQTALKIREVCTEIGIETF
CKTSGATGLHVYIPLKKRYTYDEIKLFGELLATAVQHQLPETTSIERTVSKRVDKIYIDF
LQNRKGQTIAAAYSARPKPGATVSTPLEWDEVNDQLDPKDFTIFTIHERLKKKGDLWKGV
LGKGADIGKALAKLETLLGEEE
NT seq 2589 nt NT seq  +upstreamnt  +downstreamnt
atggcattgaaactgtatcggaaaaagcggaatttcaaacaaacgcccgaaccgtcgaca
ggaaaagaaaaaccgtcggtagcgctcacatttgttgttcaacgacacgatgcatctcat
ttgcactacgatttccggctcgaaatggaaggcgtactgaaaagctgggcggttccgaaa
ggcccgtctatgaaagcaggcgaacgtcgattagcagttcatgtagaagatcacccactc
gcttacggcaaattttacggtgaaattcccaaaggaaattacggcgcaggcattgttgaa
atttgggacaacggaacgtacacaccgattcaaccggaaaaaggtacttcagccgaaaaa
caattgctgcgacaatatgccaagggtgatctgaaatttgtactgaaagggaaacacctc
aacggcgcatttgccctggtacggatgaacgacggaacggataaaaactggctgttgatc
aagaaatccgatgaacacgctgtaaaaagctacaccatatcggagatcgatccggtaaaa
gcgcataaaaaaaaagaaccggatcccgaaaatgaaatacagccggtaattcctacgcag
gaaccggaagaacctgttgaacaagaagatacaaaaacggacatcaatcatgcttggagc
catttgaaaaaaccaatgttggcaacacttgcgaaaacgcacaacgaccatcctgattgg
ctgtatgagccaaaatatgatggataccgcgccatcacgaagatttcaaacggaaaagtg
gaaatggtttcgcgcaacggaaattcattcaacaaagcctatgaaaccctgttgcccgaa
ctcgaacggtttgaagatgacttgattctcgacggtgaaattgtgatcgaaaaccgcaaa
ggcatcagcaattttcaactcttacagaattatacaactacccgaaaaggaattttgcgc
tattacgtattcgatctcttgtacctcaatggccattcgattacgcaactacctttcatt
cagcgccgtgaattactggaagctgttttcacaaaagtgaaactggaacacattcagccc
tcgcctatcgtaaaagaaaaaggcgaagaactgatgaaacgcctcactaaaatggggtat
gaaggtgtgatcgcaaaagaaagcagcagcaggtatttccccggtgcgcgatcagatgca
tggctcaaactcaaaaaccgtcaatcgctcgaagccatcatttgtggttataccgctcct
caaaacagccgcaaattcttcggatcactgattctaggtatctgcaacaacgaaaaattg
gtgtacatcggcaattgcggatcgggattcacggatacttcactcaaggagttacatgtc
caattcgaaaaactgaaaactgcaaaaagtccgttcgatccggtgccaaaaatgaccgga
caaaaaggaaaaccgacatggatcaaaccccaactcgtttgtaatatagaattcgcaaac
tggacagaagacaagcatttacgcgttccggtttttatgggattgcgcacagacaaaaaa
gcatccgaaaccatgaaaaataacgacacacaaccggatataaaaaccggtaagtcactg
aaagatggccggaaaaccgcttccgaggcaaaaaaaaccgaagacagcgatcaggaaatt
cgcatcagtggaaaaaaactcaaagtcaccaacaggaataaggtttactttcccgaaagc
gacatcaccaaaggcgatctcattgattattaccgcaagatcagcccgtttattcttccc
tatctgaagaaaaggccgcaatcgctcaatcgtcacccgaatggcattaccaaacccgga
ttctatcaaaaagatatggataccgaacagattccggaatgggtgcacaccgaaaaacag
tattccaaatcgaatgatgaatacctggattacctcatctgtgacaacgaagcaacactg
gtgtacatggtcaatctcggctgtattgagatcaatccatggcacagtttgtatgaccgt
cccgactaccctgattacatgatcatggaccttgatccgggcaatatcggcttcaaagaa
gtggttcaaactgcgttaaaaatcagggaagtatgcacggaaatcgggatcgaaacattt
tgtaaaaccagcggcgctactggcctgcacgtgtatatcccgttgaaaaaacgttatacg
tacgacgaaatcaaactcttcggcgaattgcttgcgaccgctgttcagcatcagttaccg
gaaaccacaagcatcgaacgtacagtctccaaacgggtagacaagatctatattgacttt
ctgcaaaaccggaaaggacaaaccatagcagcagcttacagtgcccgtcctaaaccagga
gcaaccgtttctactccgcttgaatgggacgaagtcaacgaccaactcgatccgaaagac
ttcacgattttcacgatccatgaacgattgaaaaaaaagggagatctctggaaaggagtc
ctcggaaaaggcgccgatattggaaaagcgcttgcgaaactggaaactttattgggagaa
gaagaataa

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