Fusarium pseudograminearum: FPSE_01790
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Entry
FPSE_01790 CDS
T03456
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
fpu
Fusarium pseudograminearum
Pathway
fpu03020
RNA polymerase
fpu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPSE_01790
09124 Replication and repair
03420 Nucleotide excision repair
FPSE_01790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpu03021
]
FPSE_01790
03019 Messenger RNA biogenesis [BR:
fpu03019
]
FPSE_01790
03400 DNA repair and recombination proteins [BR:
fpu03400
]
FPSE_01790
Transcription machinery [BR:
fpu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
FPSE_01790
Messenger RNA biogenesis [BR:
fpu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FPSE_01790
DNA repair and recombination proteins [BR:
fpu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
FPSE_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
20360409
NCBI-ProteinID:
XP_009253184
UniProt:
K3VR12
LinkDB
All DBs
Position
1:3927177..3927856
Genome browser
AA seq
172 aa
AA seq
DB search
MFFLYNLERKVTLHPSFMGRNMHELVTGKLLKDVEGTCAGSYFIISIMDAFEISEGRILP
GLGMAEFTVGYRAVVWRPFKGETVDAVVHSINPQGFFAHAGPLRLFVSAHLIPNDVKWDP
NATPPQFTNNEDTVIEPQTHVRVKIIGTRTEVGEMWAIGSIKEDYLGCLQAS
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgttttttctttataacttggaacgcaaggtcaccttgcatccttctttcatgggtcgc
aacatgcacgagctcgtgacgggcaagctccttaaggatgtcgaaggtacatgcgctggc
agctacttcatcatctccatcatggatgctttcgaaatttctgaaggtcgaatcctccct
ggtctcggtatggccgaattcactgtgggatatcgtgctgtggtatggcggccattcaaa
ggcgagacggttgatgctgtcgttcattctataaacccgcaaggcttcttcgctcatgcg
gggcctctacggctctttgtgtcggctcatttgattccgaacgacgttaagtgggatccc
aacgcgacaccacctcaattcaccaacaacgaggataccgttatcgaaccacagacgcac
gttcgcgtgaagatcatcggcacaagaacagaggtcggcgagatgtgggcgataggaagc
atcaaggaggattacctgggatgtcttcaggcctcttag
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