Frankia casuarinae: Francci3_0573
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Entry
Francci3_0573 CDS
T00320
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fra
Frankia casuarinae
Pathway
fra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Francci3_0573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fra03021
]
Francci3_0573
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_0573
Enzymes [BR:
fra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Francci3_0573
Transcription machinery [BR:
fra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Francci3_0573
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Francci3_0573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ABD09957
RhizoBase:
Francci3_0573
UniProt:
Q2JFI5
LinkDB
All DBs
Position
662999..666424
Genome browser
AA seq
1141 aa
AA seq
DB search
MAASRSSSRISFAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITS
GLEEVFKEISPIEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTAEFTNNNT
GEIKSQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDKASDKDLYSCKV
IPSRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERFGDFPSMRITLEK
DHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYKVNKKLSLGV
AHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGELIQNQVRLGLA
RMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTNPLAGLTHKRR
LNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSTFARVNPFGFIET
PYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRKGGEVEFIPPD
EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMQRQSVPLLRSEAPLVGTGMEARA
AKDAGDVVVCAQAGVVEDLSADYITVMHDDGTRRTYRLAKFRRSNQGTCINQKPIVNEGD
RVGAGQVIADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEE
HEVDARDTKLGPEEITRDIPNVAEEVLADLDERGIIRIGAEVSPGDVLVGKVTPKGETEL
TPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREDGDELPPGVNELVRVYVA
QKRKITDGDKLAGRHGNKGVIAKILPAEDMPFLEDGTPVDVVLNPHGVPRRMNIGQILET
HLGWVAKTGWQVDSGTEDWKERLRGIGADAASAGTNVATPVFDGAREEEITGLLDSTLPN
RDGIQLIGSSGKAKLFDGRTGEPYPYPVAVGYIYILKLLHLVDDKIHARSTGPYSMITQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVKGENIPEP
GIPESFKVLIKEMQSLCLNVEVLSSDGVQIEMRDTDEDVFRAAEELGIDLSRREPSSVEE
V
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgctcttcctcccgcatctcgttcgctaagatcatcgagcccctcgag
gtcccggatctccttgctcttcagacgcagtccttcgattggctgatcggtagtgacgcc
tgggcggagcgggtgcaggaggccatcgattccggccgtgacgacgttccgatcacctcg
ggtctcgaggaggtcttcaaggagatctccccgatcgaggacttctccggctcgatgtca
ctgtcctttcgggaccaccggttcgaaccgcccaagtactccgtggaggagtgcaaggac
aaggacatgaccttctcggccccgctgttcgtcacggccgagttcaccaacaacaacacc
ggcgagatcaagagccagacggtgttcatgggtgacttcccgctcatgaccccgaagggc
accttcgtcatcaacggcactgagcgcgtggtggtcagtcagctcgtgcgctctccgggg
gtctacttcgagcgcagcctcgacaaggcttccgacaaggacctgtactcctgcaaggtg
atcccctcccggggagcctggctggagttcgagatcgacaagcgcgacaccgtgggcgtg
cggatcgaccgcaagcgccgtcagtccgtcacggtgctgctcaaggcgctcggctgggac
gaggcccgcatcctcgagcggttcggtgacttcccgtcgatgcggatcaccctggagaag
gaccacaccgccggccaggacgatgcgctgctcgacatctaccgcaagctgcgcccgggt
gagccgccgacacgggagtcggcgcagaccctgctggagaacctcttcttcaacccgaag
cgttacgacctcgccaaggtcggtcgctacaaggtcaacaagaagctttccctgggtgtt
gcccacgacgtcggtgtcctcaccgagaacgacatcgtgcgcacgatcgagtacgtcgtc
aagctgcacgcgggtgccgacccggccgagtacgaggtcgacgacatcgaccacttcggc
aaccggcgcatacgcaccgtcggcgagcttatccagaaccaggtccgcctcggcctggcc
cggatggagcgtgtcgtccgcgagcggatgacgacccaggacgtcgaggcgatcaccccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctctcgcagttcatggaccagaccaacccgctcgccggtctgacccacaagcgccgc
ctgaacgcgctcggccccggtggtctgtcccgggagcgggccggcttcgaggtccgtgac
gtgcaccccagccactacggccggatgtgcccgatcgagacgccggaaggcccgaacatc
ggcctgatcggctcgctgtcgacgttcgcgcgggtcaacccgttcggcttcatcgagacc
ccgtaccgcaaggtggagaacggccgggtcaccggccagatcgactggctgaccgcggac
gaggaggaccggcacgtcaaggcgcaggcgaacaccccgctgcggcccgacggctcgttc
gcggaggaccgtgtcctggtccgccgcaagggcggtgaggtcgagttcatcccgccggac
gaggtcgactacatggacgtctcgccgcggcagatggtgtccgtggcgaccgcgatgatc
ccgttcctcgagcatgacgacgccaaccgcgcgctgatgggctccaacatgcagcgccag
tcggtgccgctgctgcgctccgaggcgccgctggtcggcaccgggatggaggcccgcgcg
gccaaggatgccggcgacgtggtcgtctgcgcccaggcgggggtggtcgaggatctctcg
gccgactacatcaccgtcatgcacgacgacggcacccggcgcacctaccggctggcgaag
tttcgccggtcgaaccagggcacctgcatcaaccagaagccgatcgtgaacgagggcgac
cgggtcggggccggccaggtcatcgcggacggcccgtgcaccgacaacggtgagatggcg
ctcggcaagaacctgctggtcgccttcatgccgtgggaggggcacaactacgaggatgcg
atcatcctgtcccagcgtctcgtccaggacgacgtgctgtcctcgatccacatcgaggag
cacgaggtcgacgcccgcgacaccaagctcggcccggaggagatcacccgggacatcccg
aacgtcgccgaggaggttctcgccgacctcgacgagcgggggatcatccggatcggcgcc
gaggtctcgcccggcgacgtcctggtcggcaaggtcacgcccaagggcgagaccgagctg
acccccgaggagcgcctgttgcgcgcgatcttcggggagaaggcccgggaggtccgtgac
acctcgctgaaggtgccgcacggtgagtccggcaaggtcatcggcgtgcgggtgttctcc
cgcgaggacggcgacgagctcccgcccggggtcaacgagctggtccgggtctacgtcgcc
cagaagcgaaagatcaccgacggggacaagcttgccggccggcacggtaacaagggtgtc
atcgcgaagatcctcccggccgaggacatgcccttcctcgaggacgggaccccggtcgac
gtcgtgctcaacccgcatggtgtgcctcggcggatgaacatcggccagatcctggagacc
cacctcgggtgggtggccaagaccggctggcaggtcgactccggcaccgaggactggaag
gagcggctgcgtggcatcggcgcggacgccgcctcggccggcaccaatgtggcgaccccc
gtcttcgacggtgcccgcgaggaggagatcaccggtctgctcgactccaccctgcccaac
cgcgacggcatccagctgatcggctcctccggcaaggccaagctgttcgacggccggacc
ggtgagccgtacccctacccggtggcggtcggctacatctacatcctcaagttgctgcac
ctggtcgacgacaagatccacgctcggtcgaccggtccctactcaatgatcacccagcag
cccctgggtggtaaggcgcagttcggtggccagcggttcggcgagatggaggtgtgggcg
ctggaggcctacggcgccgcctacgccctgcaggaactactgaccatcaagtccgacgac
gtcgtgggccgggtcaaggtctacgaggcgatcgtcaagggcgagaacattccggagccc
ggtatcccggagtcgttcaaggtgctcatcaaggagatgcagtcgctgtgcctcaacgtc
gaggtgctctccagcgatggcgtgcagatcgagatgcgtgacaccgacgaggacgtcttc
cgtgcggcggaggaactcgggatcgacctgtcccggcgtgagccgagcagcgtcgaggag
gtctga
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integrated database retrieval system
