Pseudofrankia inefficax: FraEuI1c_5070
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Entry
FraEuI1c_5070 CDS
T01354
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
fri
Pseudofrankia inefficax
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fri03021
]
FraEuI1c_5070
Transcription machinery [BR:
fri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FraEuI1c_5070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
HTH_28
Sigma70_ECF
HTH_24
HTH_23
PDDEXK_1
HTH_10
HTH_AsnC-type
DUF134
GerE
Motif
Other DBs
NCBI-ProteinID:
ADP83059
UniProt:
E3J4E0
LinkDB
All DBs
Position
complement(6238038..6238625)
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AA seq
195 aa
AA seq
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MVTGDRPRPTTETASADAELHRRLVAGDETALCEAYRLFGKLVHTLAQRVTRDRDAAGDI
VQDVFGYLWERPLRYDPNRAALRTWLAMLAHRRAVDWVRAEERQRAAAGRFGPPQEAVPS
AAETVEVADTFCRVRHTVAGLPESLRTAVELAFYRGMTYREVAAELGIPEGTAKSRMRSA
LARIARALAEEGIGG
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
gtggtgacgggggaccgcccgcggccgacgaccgagacggcgtcggcggacgcggaactg
cacagacggctggtcgccggtgacgagaccgcattgtgcgaggcctaccggctgtttgga
aaacttgttcatacgcttgcccagcgggttacccgcgaccgggacgccgccggcgacatc
gttcaggacgtgttcgggtatctctgggaacggccgctgcgctatgacccgaaccgggcc
gctctgcgaacctggctggcaatgctggcgcaccgccgggccgtcgactgggtgcgtgcg
gaggaacgtcaacgggccgcggccgggcggttcgggccgccgcaggaggcggtcccgagt
gccgccgaaacagtggaggtggcagacaccttctgccgggtacggcacaccgtcgccggt
cttcccgagtccctgcggaccgcggtcgagttggcgttctaccgggggatgacctaccgt
gaagtagcggccgagctcggaatcccggagggtacggcgaaatcacgaatgcgcagcgca
ctggcgcgcatcgcccgggctctcgccgaggaaggtatcggcggatga
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