KEGG   Frondihabitans sp. PAMC 28766: AX769_10440Help
Entry
AX769_10440       CDS       T04281                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
frp  Frondihabitans sp. PAMC 28766
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:frp00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AX769_10440
Enzymes [BR:frp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AX769_10440
DNA repair and recombination proteins [BR:frp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AX769_10440
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(2156635..2159181)
Genome map
AA seq 848 aa AA seqDB search
MATKGRGERVSVGGHTLQLTNLDKVLYQATGTTKGDVIAYYAAVAEWMLPHTEDRPATRK
RWVNGVDGEVFFEKNLPDSAPDWVASHTIEHSDHSNVYPLVNDLATLTWLGQVAALEIHV
PQWRFGPRGAQRNPDRLVLDLDPGEGVGLPECVAVAQELKKIVDGMGLGLMPVTSGSKGI
HLYAALDGKQSPQQVSDIAHELAKAMEADHPDLVLSTMGKQDRRGKVFLDWSQNNGNKTT
IAPYSLRGREHPTVAMPRTWRELASRTLRQMEYPDVLKALKRRGDPLADLSSGTPVPPGE
LDRETMHNSETPVSAREDRLAKYRSMRDPSKTREPVPAEAPEPSDNQTFVIQEHHATRLH
WDFRLEHDGVLVSWALPKGEPQDVKQNHLAVQTEDHPLEYGTFEGTIAKGEYGAGEVTIW
DSGTYDLEKWRDGKEVIVVLHGEQRGSRRIALIHTGHGGGAGSSTAKQEHNWLIHRMKDD
DADDAGSGGKASRPSSKGGHQDPAPRPQTKRTTRKRPVGDPVQPMLASPGDAAAIGDASD
WAYEMKWDGVRAVVTVHDGAVTLTSRNGHDMSASYPEFDGLPDRLGDVGDAVLDGEIVAV
DRNGRPDFGLLQTRMKLTRPRDVERVRETAPVRLLLFDVMSLDGQSLEDDDYDTRRAALQ
KAVELKPRDKTIDVPPAFEGSLAEAMSFSKRLKLEGVVAKRRDSGYSAGRRSRAWIKLKH
HATQEVVIAGWRPGAGRRANGVGSLLMGLPTDEGLKYVGRVGTGFSDKELDELLPTFGRE
ARKTSPLVDVPTADARDAHWITASRVGEVEFAEWTSTGRLRQPSWRGWRPDKDVDQVVRE
SGDPSRAS
NT seq 2547 nt NT seq  +upstreamnt  +downstreamnt
atggcgacgaaagggcgaggcgagcgcgtcagcgtgggcgggcacaccctccagctgacg
aacctcgacaaggtgctctaccaggcgaccggaaccaccaagggcgacgtcatcgcctac
tacgcggccgtcgccgagtggatgctgccccacaccgaggatcgcccggcgacccgcaag
cgctgggtcaacggtgtcgacggcgaggtcttcttcgagaagaatctgcccgactccgca
cccgactgggtcgccagccacaccatcgagcactccgaccactcgaacgtctacccgctc
gtcaacgacctcgccacgctcacctggctggggcaggtcgcagcgctcgagatccacgtg
ccgcagtggcggttcgggccgcggggcgcccagcgcaaccccgatcgcctggtcttggac
ctcgatcctggtgagggtgtcggcctgcccgagtgcgtcgccgtcgcccaagagctcaag
aagatcgtcgatggcatgggcctcggcctcatgccggtgaccagcggcagcaagggcatc
cacctctatgccgcgctcgacggcaagcagagcccgcagcaggtcagcgacatcgcccac
gagctcgccaaggccatggaggccgaccaccccgacctcgtgctgtcgacgatgggcaag
caggatcgccgcggcaaggtgttcttggactggtcgcagaacaacggcaacaagacgacc
atcgcgccgtactcgctgcgcgggcgtgagcaccccaccgtggccatgccgcgcacgtgg
cgcgagctggcgtcgaggacgctgcggcagatggaataccccgacgtgctgaaggcgctg
aagcgccgcggcgacccgctagccgacctgtcgtcgggcacgcccgtgcctcctggcgag
ctcgatcgcgagacgatgcacaacagcgagacgcccgtctcggcccgtgaggatcgcctc
gcgaagtaccgctcgatgcgcgacccctcgaagacccgcgagcccgtcccggccgaggcg
cccgagccgagcgacaaccagaccttcgtgatccaagagcaccacgcgacccgtctgcac
tgggacttccgcctcgagcacgacggcgtgctcgtcagctgggccctgccgaagggcgag
ccgcaggatgtcaagcagaaccacctcgctgtccagaccgaagaccacccgctcgaatac
ggcaccttcgagggcacgatcgccaagggcgagtacggcgcgggcgaggtcaccatctgg
gactccggaacgtacgacctcgagaagtggcgcgacggcaaagaggtcatcgtcgtgctg
cacggcgagcagcgcggttcgcggcgcatcgcgctcatccacacggggcacggcggcggc
gccggttcgtcgaccgccaagcaggagcacaactggctgatccaccggatgaaagacgac
gacgccgacgacgcgggctctggagggaaggcctcgcgaccctcctcgaagggcgggcac
caggatcctgcgccccgccctcaaacgaagcgcacgacccgcaagcggccggtcggcgac
cccgtgcagccgatgctcgcgagcccgggcgacgccgccgccatcggcgacgccagcgac
tgggcgtacgagatgaagtgggacggcgtgcgcgcggtcgtcaccgtgcacgacggcgcc
gtcacgctgacgagccgcaatggtcacgacatgtccgcgtcgtacccggagttcgacggt
ctgcccgaccgcctcggcgacgtcggcgacgctgtgctcgacggcgagatcgttgcggtc
gaccgcaacggccggcctgacttcgggctgctgcagacccggatgaagctgacccgcccg
cgcgacgttgagcgtgtgcgcgagacggcccccgtgcggctgctgctcttcgacgtgatg
tcgctcgacgggcagtcgctcgaagacgacgactacgacacgcgccgcgcggccctccag
aaggccgtcgagctgaagccccgcgacaagacgatcgacgtgccgcccgcgttcgagggc
tcgctcgccgaggcgatgtcgttctcgaagcggttgaagctcgagggcgtcgtggccaag
cgccgcgacagtggctattcggccggccgccgcagccgcgcctggatcaagctcaagcac
cacgcgacgcaggaggtcgtgatcgccggctggcgccccggggccgggcgtcgcgcgaac
ggcgtcggctcgctgctgatgggcctgccgaccgacgagggcctgaagtacgtcggccgc
gtgggcaccggcttcagcgacaaggagctcgacgagttgctgccgaccttcgggcgcgag
gcgcgcaagacctcgccactcgtcgacgtgccgacggcggacgcccgtgacgcgcactgg
atcacggcgtcgcgcgtcggtgaggtcgagttcgccgagtggacgtcgaccgggcgcctc
cgccagccgtcgtggcgcggctggcgccccgacaaagacgtcgaccaggtcgtccgcgag
tcaggagacccctcgcgcgcatcgtag

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