Fragaria vesca (woodland strawberry): 101302977
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Entry
101302977 CDS
T02666
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
3.6.4.13
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101302977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101302977
Spliceosome [BR:
fve03041
]
Complex C
Other components
Step II factors
101302977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
TsaE
Sigma54_activ_2
AAA_16
ABC_tran
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
101302977
NCBI-ProteinID:
XP_004306870
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Position
LG7:complement(6098632..6104138)
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AA seq
1203 aa
AA seq
DB search
MVAIDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRNCESVDEFDAKLKEHG
AEMPDYFVRTLLTIIHAILPPKAKSENDSKKESTAEGSKSKFKALSIADNRDRVKDIQRE
IEMETKEKQNDREEWGDEREEDRPRGRGRERDTDRERERDRDRDRDRDRDRDRDRDRDRR
ERGRDRYDRDERGRDRHYHDYDKGRHTDRSNKHRRDDYVEDGDVREDDDGDRRGSGDQQN
GLHHSEEPELYKVYKGRVSKVMDTGCFVQFSDFRGKEGLVHVSQIATRRIGNAKDVVKRD
QEVYVKVISISGQKLSLSMRDVDQHTGQDLLPLKNSEDDSLRTNPSISKDEGPVTRTGLS
GIRIVEEDVTAPSRRPLKRMSSPEKWEAKQLIASGVLGVKEYPMYDEETDGMLFEEEGAE
EELEIELNEDEPAFLHGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQ
RTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTVTFGQRSK
LSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGC
TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEN
LSQYSVVMLDEAHERTIYTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSSYFFNCNIF
TIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYE
RMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVI
DPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPT
SVPEIQRINLGTTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTK
LGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIISMIQTGNIFYRPREKQAQADQKRAKF
FQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVS
AGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELV
MTTKEYMREVTVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK
RRA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggttgccattgatgatggtttgaagaagctcgagtacctttccttggtttccaaggtc
tgttcagagctggaaactcatttagggtttggggacaaagttctagccgagttcataact
gaaatgggaagaaactgtgagagtgtggatgaatttgatgccaaattgaaggaacacggt
gccgagatgcctgattactttgtccgtacactgctcactatcattcacgcaattcttcct
ccaaaggcaaagtccgagaacgactcaaagaaagagagcactgctgaaggtagtaaaagc
aagttcaaggctttgtctattgctgataacagggatagggtaaaggatatccagagggaa
attgagatggagaccaaggaaaagcaaaatgacagagaagaatggggagatgagcgtgaa
gaagataggcccagaggtagaggtagggaaagagatacagatcgagaaagagaaagagac
agagacagagacagagacagagacagagaccgagatagggatagggatagggacagaaga
gagaggggaagggataggtatgatagagatgaaaggggaagagatagacattatcatgat
tatgataagggaaggcatacagatcgttccaacaagcacaggagggatgattatgtagag
gatggtgatgttagagaagacgatgatggtgataggagaggaagtggagatcagcagaat
ggactgcaccattctgaggagcctgaattgtataaggtttataagggtagggtatcaaaa
gtgatggacacgggttgctttgttcagttcagcgactttagagggaaggagggtttggtt
catgtttcgcagattgcaactcggcgaattggaaatgctaaagatgtggtgaagagggat
caagaggtctatgttaaggtgatttcaatatctggtcaaaagttgagcctttcaatgaga
gatgttgatcagcatactggccaggatttgcttcctctgaagaactcagaggatgattct
cttaggacaaacccatcgatatcaaaggatgaggggcctgtgacaaggacgggtctctct
gggattaggattgtggaagaggatgttactgccccatctcgccggccattgaagagaatg
agctcaccagaaaagtgggaagccaaacagctgattgcctcgggtgttttgggtgtcaaa
gagtatcccatgtatgatgaagaaacagatgggatgctttttgaagaagaaggagctgag
gaagaacttgagattgagcttaatgaggatgagccagcctttttgcatgggcaaaccagg
tattcagtagatatgtcaccggtgaaaatctttaagaatccagaagggtcattgagtcgt
gcagctgcacttcaatctgcactcattaaggagcgtagagaagtgcgtgagcagcagcaa
agaaccatgttagattcaatcccaaaggatctaaatcgtccttgggaagatccaatgcca
gagactggtgagaggcatcttgcacaggaacttagaggtgttggattgtcggcctatgac
atgcctgagtggaagaaggatgcttttgggaagactgtcacttttggacagaggtcaaag
ctctcaattcaggaacagaggcagagcttgcctatctataagctgaagaaagaattggtt
caggcagtgcatgacaatcaagttcttgttgtcattggtgagactggttcaggcaagaca
actcaggtgacacagtatcttgcagaagctggttacactacaatgggtaagattgggtgt
acacaaccacgtagggtggctgcgatgtctgtagccaagagggtcgctgaagagtttggt
tgtcgtctgggggaggaagttggatatgctattcgttttgaggattgcactgggcctgat
actgtaatcaagtacatgacagatggtatgcttcttagagagatactgattgacgagaat
ctttctcaatactctgtggttatgcttgatgaagctcatgagaggacaatctatacagat
gttctttttggattattgaagaaacttgtgaagcgtaggccagaccttcgtttgattgtc
acatctgctaccttggatgctgagaagttttcatcttatttcttcaactgtaacattttc
actatccccggaagaacttttcctgtagagatactctacaccaagcagccagaaagtgat
taccttgatgcatcgttaatcactgttctacaaattcacttaacagagccggaaggtgac
atccttctcttcttgacgggacaggaagaaattgattttgcatgccagtcactttatgag
aggatgaagggtcttggtaaaaatgtgcctgagttgattatcttaccagtttatagtgcc
cttcctagtgaaatgcagtcaaggatatttgatccagccccacctgggaagaggaaagta
gttgtggctactaatatagccgaggcatcactgaccatcgatgggatattttatgtaatt
gaccctggatttgcaaagcaaaatgtttataacccaaagcaggggctagattcactggtc
attaccccaatttcacaagcatcagccaagcagcgagctggacgtgctggccgtactggg
cctgggaaatgttaccgcctttacactgagagtgcttaccggaatgagatgtcccctact
tcagttccagaaattcagaggataaatcttgggactactacacttacgatgaaagcaatg
gggataaatgatctcttgtcttttgattttatggatcctccttcaccccaagcactcatt
tctgctatggaacaactttacagtttaggagcgctagatgaagagggtcttctgaccaag
ttgggtaggaaaatggccgagtttcctctggatccaccgttatctaagatgcttctggcc
agtgtggaccttggatgtagtgatgagatcctgactatcatttctatgattcagacagga
aatatattttacaggcctagggaaaagcaagcccaggctgatcagaagagagccaagttt
ttccagccagagggagatcatctgactttacttgcagtctatgaggcttggaaagctaag
aacttttcagggccttggtgttttgagaacttcgttcagtctcgatcccttaggagggcg
caggatgtcagaaaacagcttctaagcatcatggataagtataaactggatgttgtgagt
gctggaaagaattttacgaagatcaggaaggcaattactgcaggctttttcttccatggt
gctagaaaggacccacaagagggttatagaaccctagtggagaatcagccagtttatatc
catccaagcagtgctctcttccagagacaaccggattgggtcatctaccatgagttggtt
atgactacaaaggagtatatgcgggaggtgacagttgttgaccccaaatggcttgtggaa
ctagcacccaggttcttcaaggtggctgatcctaccaagatgagtaagcgcaagcgtcaa
gaacgtattgaaccactatatgatagataccatgaaccaaactcctggcgtcttagcaaa
cggcgtgcttga
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