Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_1221
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Entry
GbCGDNIH4_1221 CDS
T03156
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GbCGDNIH4_1221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_1221
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GbCGDNIH4_1221
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GbCGDNIH4_1221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
BCA_ABC_TP_C
AAA_25
DnaJ_CXXCXGXG
nSTAND1
AAA_23
AAA_21
DUF4350
Motif
Other DBs
NCBI-ProteinID:
AHJ66404
LinkDB
All DBs
Position
1326152..1329115
Genome browser
AA seq
987 aa
AA seq
DB search
MIYCCYPCGTFPEHFPCRCCFCPLLSCRIDRMAGSIRVRGAREHNLKNVDIDIPRDSLTV
ITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLELAGKPDVDSIEGLSPAISIEQK
TTSRNPRSTVGTVTEIHDYMRLLWARAGVPYSPATGLPIEAQTISQMVDRVLDMPSGTRL
LLLAPVVRDRKGEYRKELAELQRRGFTRVKVDGELYDIGDVPALNRKLKHTLEAVVDRVV
VKAGLQQRLADSFETALGLSDGIVYAEDATSGERTVFSSRFACPVSGFTIEEIEPRLFSF
NSPHGACPACDGLGVENFFDPDLVVPNERLSLKEGAIAAWSGAASPYYDQTLMALAAHYR
VDPRTAWEELPDICRNGILFGTEEDVSITYKDGVRSYTVKRPFEGVIRNLERRLRETDSV
WVREELSRYQAEKPCHVCDGARLKPEALAVKINSKDIAAASDLSIRDALPWFQSVLASLT
PQRAEIARRILREIEDRLQFLLDVGLDYLTLARSSATLSGGESQRIRLASQIGSGLTGVL
YVLDEPSIGLHQRDNDRLLGTLRRLKSLGNTVLVVEHDEDAIRAADHLIDMGPGAGVNGG
HVIACGTPQEVAKHPDSLTGAYLSGRAAIAVPQQRRPIQKKRMLTLVGAKGNNLKNVTAH
FPLGTFTCVTGVSGGGKSTLVVDTLYKLTARRLMGAAQVPAPYERIEGLELLDKIIDIDQ
SPIGRTPRSNPATYTDLFAPIREWFAELPESRARGYKAGRFSFNVKGGRCEACQGDGVLK
IEMHFLPDMFVTCDTCKGKRYNRETLEVKFRDKSIADVLDMSVDEAVPYFSAANRIHDRL
KILQQVGLGYVKLGQQATTLSGGEAQRVKLSKELARRATGRTLYILDEPTTGLHFEDVRK
LLDVLHTLVDQGNTVIVIEHNLEVIKTADWILDLGPEGGDGGGRIVAEGTPEQIAASHES
HTGRFLAPLLAKPTASPRRINRKRAAE
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
gtgatttactgttgctatccatgcggaacttttccagaacattttccttgtcgttgctgt
ttctgccccctcctctcgtgtcggattgatcgtatggccggttccattcgtgtgcgcggt
gcccgcgagcacaacctgaaaaacgtcgatattgatattccacgggatagcctgacggtt
atcaccggactgtccggctccggcaaatcatcactggccttcgatacgatctatgccgaa
gggcagcggcgttacgtcgaaagcctgtccgcctatgcaagacagtttctggaactggcg
ggcaagccggatgtcgacagtatcgaaggtctctctcccgctatctcgatcgagcagaag
accaccagccgcaatccccgctctacggtcggtacggtaacggaaatccacgattatatg
cgtcttctctgggcgcgcgcaggcgttccctactctcccgcgaccgggctgccgatcgag
gcccagaccatcagccagatggtggaccgggtgctggacatgccatcgggcacaaggctg
ttgctgctggcgccggtggtgcgcgaccgtaagggggagtaccgcaaggaactcgccgag
ttgcagcgccgtggctttacacgcgtcaaggtggacggggaattatacgatattggcgat
gtccctgccctgaaccgaaagctcaagcatacgctggaagcagtggtggatcgcgtggtg
gtcaaggcgggactgcaacagcggctggcagacagtttcgaaaccgcgttggggctgtct
gacggaatcgtctacgccgaagatgcgaccagcggagaacgcacggtcttttcctcccgc
tttgcctgcccggtcagtggctttaccattgaggagatcgagccacgcctgttcagcttc
aactccccacacggtgcctgcccggcctgtgacgggctgggggtcgagaatttcttcgat
cccgatctggtcgtgccgaatgaacgactcagcctcaaggagggtgccattgcggcatgg
tccggtgcggccagcccttactacgatcaaacgctgatggctctggctgcgcattatcgc
gtcgatccacgtaccgcgtgggaggaactgccagatatatgtcgcaacggcattctattc
ggcaccgaagaggatgtttccattacctataaggacggggtgcgcagctatacggtcaaa
cggccattcgaaggcgtcatccgcaatctggaacgccgtctgcgcgagaccgacagcgta
tgggtgcgggaggaactgtcgcgttatcaggccgaaaaaccttgtcatgtctgtgatggt
gcccggctcaagccggaagctctggccgtcaagatcaatagcaaggacattgcagcggcc
tcggatttgtcgatccgcgatgcgctgccctggttccaatccgtgctggccagtctgacc
ccgcaacgggccgaaatcgcccggcgcatcctgcgtgagatcgaggaccggcttcagttt
ctgctggatgtcggcctcgattatctgacccttgcacgatcctccgccaccctgtccggg
ggagagagccaacgcatccggctggcaagccagatcggctctggcctgacaggggtgctc
tatgtgctcgacgaaccgtccatcgggttgcaccagcgtgataatgaccggctgctcggc
acgctccggcgactgaaatcactcggcaacactgtgctggtggtcgagcatgacgaagat
gcgatacgcgctgccgaccatctgattgatatggggccgggcgcgggcgtcaatgggggg
catgtgatcgcctgcggcaccccgcaggaggtcgcgaaacatcccgatagtctgacaggc
gcctatctgtcaggccgtgccgccatcgccgttccccagcagcgccgtccaatacagaag
aaacggatgctgacgctggtgggagcaaagggcaataacctcaaaaatgtcacggcgcat
tttccattgggaacttttacctgcgtcaccggtgtgtccggtggcgggaaatccacgctg
gtggttgatacgctctacaagctgaccgcaaggcggttgatgggggcggctcaggtgcct
gcgccgtatgagcggatcgagggactggaactgctcgacaagatcatcgacatagaccag
tccccgatcggacgcacgccgcgttccaatccggccacctatactgatctgttcgccccg
atccgggaatggttcgccgaattgccggaaagccgggcacgaggctacaaggcaggccga
ttcagcttcaatgtcaaaggcggtcgctgtgaagcatgtcagggcgacggggtgctgaaa
atcgagatgcacttcctgccggatatgttcgtcacctgcgatacctgtaaaggcaaacgg
tataaccgtgagacgctggaagtaaaattccgcgataaatccattgccgacgtgctggat
atgtcggtcgatgaggccgtgccctatttcagtgccgcaaaccgtatccatgaccggttg
aaaatcctgcaacaggtcgggttgggatatgtaaagctgggtcagcaggccaccacgctt
tccggcggcgaggcacagcgtgtgaaattgtccaaggaactcgcccgccgtgcgaccggg
cggacgctgtatatcctcgacgaacccaccaccggcctgcatttcgaggatgtccgcaag
ctgctggatgtgctgcacacgctggttgatcagggcaataccgtcatcgtgatcgaacac
aatctggaagttatcaagacagcggactggattctggatctcggtccggaaggcggggat
ggcggcggacgaattgtggcggaaggcacgcctgaacagattgcggcctctcacgaaagc
cataccgggcgttttctggctccgcttcttgcgaaaccaaccgcgtccccacgccggatc
aaccgcaagcgggccgctgaataa
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