Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_0325
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Entry
Gdia_0325 CDS
T00798
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gdia_0325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_0325
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gdia_0325
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Gdia_0325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
DUF87
Kinesin
AAA_5
AAA_33
Microtub_bd
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ACI50121
LinkDB
All DBs
Position
complement(360161..362392)
Genome browser
AA seq
743 aa
AA seq
DB search
MPAPASKKTRRPDPSDEIVTFQPERQPPKEKTRRLTIQSPYEPAGDQPRAIGELVAGVEG
GERDQVLLGVTGSGKTFTMAKIIEATQKPTLILAPNKTLAAQLYGEMKQFFPDNAVEYFV
SYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRHAATQALLERNDVIIVASVSCIYGIGS
VETYSRMVVRLEVGGEIDRDRLVKALVDLQYRRNDAAFQRGTFRVRGESVDVFPVQNEDR
AWRISLFGDEIDAITEFDPLTGDKTGDLQEVSIYANSHYVTPRPTLNQAVIGIKHELRQR
LNDLTEEGKLLEAERLQQRTTFDLEMIETTGVCKGIENYSRYLSGRQPGDPPPTLFEYLP
EDALLIVDESHVTVPQIGGMERGDFARKSILSEFGFRLPSCLDNRPLKFAEWDLFRPQTI
FVSATPGPWEMERVGGVFAEQVIRPTGLIDPVTDIRPVERQVDDLLAECRLTIAAGGRVL
VTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLERIEIIRDLRLGAFDVLIGINLLREGL
DIPECSLVAILDADKEGFLRSRTSLVQTIGRAARNVDGRVVLYADKMTDSLRYAIEETAR
RREKQSAWNAAHGITPQSVRKQIGEALSSVFEQDYVTVAPTKDGDVAEFVGKDLGSAIAE
LEKRMRAAAADLEFETAARLRDEIKRLEALELGLDPVPVPVSTAGTGRPPRRKAGKGPEP
LGPGGGGYDPSKGRGPRRRGGGR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcccgccagcaagaagacccgccgtcccgatccgtcggacgagatcgtgacc
ttccagcccgaacggcagccgccgaaggagaagacgcggcgactgaccatccagtcgccc
tacgaaccggcgggcgaccagccgcgtgccatcggcgaactggtggcgggggtcgaaggc
ggcgagcgcgaccaggtgctgctgggcgttaccgggtcgggcaagaccttcacgatggcc
aagatcatcgaggcgacgcagaaacccaccctgatcctggcgccgaacaagacgctggcg
gcccagctctatggcgagatgaagcagttcttccccgacaacgcggtggaatatttcgtc
agctactacgattactaccagcccgaggcctatgtcccgcgctcggacacctatatcgaa
aaagacagccagatcaacgaacagatcgaccgtatgcgccacgccgcgacccaggcgctg
ctggaacgcaacgacgtcatcatcgtggcctcggtgtcgtgcatctacggtatcggctcg
gtcgaaacctattcgcgcatggtggtgcggctggaggtcgggggggagatcgaccgcgac
cggctggtcaaggcgctggtggacctgcaataccggcgcaacgacgcggccttccagcgc
ggaacctttcgcgtgcgcggtgaaagcgtggacgtgttcccggtgcagaacgaggaccgg
gcctggcggatctcgctgttcggcgacgaaatcgacgccatcaccgaattcgatccgctg
acgggcgacaagaccggcgacctgcaggaggtcagcatctacgccaacagccattatgtc
acgccgcgccccacgctgaaccaggcggtgatcggcatcaagcatgaactgcgccagcgc
ctgaacgacctgacggaagagggcaagctgctggaggccgagcggttgcagcagcgcacc
acgttcgacctggagatgatcgagaccaccggggtgtgcaagggaatcgagaattattcc
cgctacctgtccggccgccagcccggcgatccgccgccgaccctgttcgaatatttgccc
gaggacgcgctgctgatcgtcgatgaaagccacgtcaccgtgccgcagatcggcggcatg
gagcggggggatttcgcgcgcaagtccatcctgtcggaattcggcttccgcctgccgtcc
tgcctggacaaccggccgctgaaattcgcggaatgggacctgttccggccgcagacgatc
ttcgtcagcgccacccccggcccgtgggaaatggaacgcgtgggcggcgtctttgccgaa
caggtcatccgccccaccgggctgatcgacccggtgaccgatatccgcccggtggaacgg
caggtcgatgatctgctggcggaatgccgcctgaccatcgcagcaggggggagggtgctg
gtcacgaccctgaccaagcgcatggccgaggacctgaccgattacatgaacgaggccggg
attcgcgtccgctacctgcattcggacgtcgatacgctggaacggatcgaaatcatccgc
gacctgcgcctgggcgcgttcgacgttctgatcggcatcaacctgctgcgcgaggggctg
gacattcccgaatgttcgctggtcgcgatcctggacgcggacaaggagggcttcctgcgc
tcgcgcacctcgctggtccagacgatcgggcgcgcggcgcgcaacgtggacgggcgcgtc
gtgctctatgccgacaagatgaccgacagcctgcgctacgccatcgaggaaacggcgcgg
cggcgggaaaagcagtcggcctggaacgcggcgcacgggatcacgccgcaatcggtccgc
aagcagatcggcgaggccctgtcttcggtgttcgagcaggattacgtcaccgtcgcgccc
acgaaggatggggatgtcgcggaattcgtcggcaaggatttgggcagcgcgatcgccgag
ttggaaaagcggatgcgcgcggcggcggcggacctggaattcgaaaccgcggcgcggctg
cgcgacgagatcaagcggctggaggcgctggaactgggactggacccggtaccggtgccc
gtctcgacggcaggcaccgggcggccgccccggcgcaaggcgggcaagggacccgagccg
ttggggccgggcggcggcggatatgatccgtccaaggggcgtggaccgcgccgccgaggt
gggggacgatag
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integrated database retrieval system