Geobacter sp. M18: GM18_0420
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Entry
GM18_0420 CDS
T01421
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
geb
Geobacter sp. M18
Pathway
geb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GM18_0420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0420
Enzymes [BR:
geb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GM18_0420
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GM18_0420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
RecD_N
AAA_22
UvrD_C
SLFN-g3_helicase
AAA_16
nSTAND3
EutK_C
Imm41
Motif
Other DBs
NCBI-ProteinID:
ADW11903
UniProt:
E8WPC4
LinkDB
All DBs
Position
complement(524860..526659)
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AA seq
599 aa
AA seq
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MTPEGVQLNDIDRQFAAFICRQAGSRDQHLEAAAALLSRGVTAGDVCLDLAGALEQGRAA
GYRLESAAAWRKRLAAAPVVGAPGEFKPLILDHADRLYLQRYWRYENELAEAIMKRGEPA
DFDRELLRKGLARLFPPTPGETDWQRIAALAAVTRRFCVISGGPGTGKTSTVVKVLSLLL
EQSEAAGTGNGLRIALAAPTGKAAARLKESISAGLDKADAGVRGLIPEDVFTLHRLLGYL
KGSSGFRHNSDNLLPYDVVIVDEASMVSLPLMAKLVCALRQDTRLILLGDRDQLASVEAG
AVLGDMCDTGGVHGFSCDFASLAAVVAGDAVSVQPGIGPLGDAVVLLRKSYRFSAAGGIG
KVGALVNAGDAPAALAACLDPALADVSLATLPPANGLADALAKRITEGFGAYLREQSPEQ
AFAQFSRFRILCAMRSGPYGVEAINLLVRQRLAQAGLIKPHGRWYAGEPVMITKNDYNLG
LFNGDVGLILPDAESEGELRAFFPSGSGGMRKVLPLRLPEYECAFAMTVHKSQGSEFDRV
LLVLPDRDTPVLTRELLYTAITRAKNSVEMLATEQLFLATVERRVIRRSGLRERLWKGN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgaaggagttcaactaaacgacatagaccggcagttcgccgccttcatctgc
cggcaggcgggaagccgcgatcagcacctggaagcggcggccgcactgttgagccgtggc
gtgactgcgggggacgtatgtctcgacctggctggtgcgctggagcaagggcgcgccgcc
ggatatcgcctggaatcggcagcggcctggcgcaagcgcttggctgctgcgccggtagtc
ggcgcgccgggcgaattcaaaccgctcatcctggaccacgccgaccggctctacctgcag
cgctactggcgctacgagaacgaactcgccgaggccatcatgaagcgcggcgaaccggcc
gatttcgaccgtgaattgctgcgtaaggggctcgcacgcctcttcccccccacgccgggt
gagacagactggcagcgcatcgcggccctggccgcggtcaccaggcgtttctgcgtcatc
tccggaggcccgggaaccggcaagacttcaaccgtggtaaaggtgctctccctgcttctg
gagcagtcggaggcggctggaaccggaaacggtctccgcatcgccctggcggccccgacc
ggcaaggcagcggcgcggctgaaggagtcgatctccgccgggctggataaggccgatgca
ggggtacgtggactgatcccggaggacgtcttcaccctgcaccgtctccttggttacctg
aagggctccagcggtttccgccataacagcgataacctgctcccctacgacgtggtcatc
gtcgacgaggcatccatggtctcgctgccgctcatggccaagctggtctgcgcgctgcgg
caggacacccgcctgatcctcctgggggaccgggaccagctcgcgtcggttgaggccggc
gccgtcctcggcgacatgtgcgataccggcggggtgcatggcttctcctgcgattttgcc
tccctcgcagccgtggtcgcgggcgacgccgtttccgtccagccgggcatcggaccgctg
ggtgatgcagtcgtgctgctgcgcaagagctaccgcttttcggctgccggcggcatcggc
aaggtcggtgccctggtcaacgcgggtgacgccccggcggctctggccgcctgcctcgat
cccgccctcgcggatgtctcgctggccacattgccgccggcaaacggtctggccgatgcc
cttgccaaacggatcaccgaagggttcggcgcctatctgagagagcaaagtcctgaacag
gcattcgcgcagttcagcaggttccgcatcctgtgcgccatgcgcagcggcccgtacggc
gtcgaggcgatcaacctcctggtgcggcagcggctggcccaggccgggctgatcaaaccg
cacggccgctggtacgccggcgagccggtcatgataacgaagaacgactacaacctcggc
ctcttcaacggcgacgtaggcctgatcctccctgacgccgagtccgaaggggagctgcgc
gccttcttcccctccggctccggcgggatgaggaaagtgctgccgctcaggctacccgag
tacgaatgcgccttcgccatgaccgtgcacaagagccagggttccgaattcgaccgggtg
ctgctcgtcctccccgatcgcgacactccggtgctgacgcgggaacttctgtacacggcg
attaccagggcaaagaactctgtggagatgttagctaccgagcagcttttcctcgccact
gtggagcgtcgtgtgattagacggtccggtctccgcgaacggctttggaaaggaaattga
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