KEGG   Geobacter sp. M21: GM21_3334
Entry
GM21_3334         CDS       T00933                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gem  Geobacter sp. M21
Pathway
gem03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GM21_3334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gem03021]
    GM21_3334
   03400 DNA repair and recombination proteins [BR:gem03400]
    GM21_3334
Enzymes [BR:gem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GM21_3334
Transcription machinery [BR:gem03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GM21_3334
DNA repair and recombination proteins [BR:gem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GM21_3334
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C ApbA_C
Other DBs
NCBI-ProteinID: ACT19359
UniProt: C6E4R3
LinkDB
Position
complement(3856389..3860537)
AA seq 1382 aa
MEDIFNFFDKPKDPLHFSSIKISISSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLMDITLKDLEKVLYFEAYVVTDPKETGLAFGTVFSEDQYQKALEEYSYGFEAGM
GAAAIRTCLTSMDLDQLSEQLRIEMQEATSEAKRKKTAKRLKVMEAFKNSGNKPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKEKPEVWDVLEEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTREKHFALGEGKIFASADEVNIAWDAG
EIHLQARIKVRMKNLVSDEKPTLIETTTGRVLLRDILPDAVPYATINKVMTKKELSNLVD
VCYRLAGNKETVILADKLKAIGFRYAAKAGISISINDMVIPEGKPAIITRATEEVQEIQN
QYTEGLITDGERYNKVIDIWAKSTEDIAKEMLDNLSRDTILDPEGKEVKVPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITEADCGTIDGLTVSSLTEGGEVIEHIGDRILGRVALD
DILDPVTGDVLVPANEEIDENLVARIEAAGLEKVKIRSVLTCESRRGICAKCYGRDLARG
HLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTALEARNEGFAKFININYV
TNSEGHHIVMNRNGELAIVDETGREREKYGVVYGAKIKVSPQEKVTQGQSVAEWDPYTMP
ILTEIAGRVKFGDVIEGVTMEEQVDEVTGLSRKVIIETRDADKRPRITIKDESGKTAKIG
DSLLARYYLPVGSNINVLEDTEVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPKD
FAVITEIDGVVAFGKDAKGKRKVLVTPELGEPKEYLIPKGKHISVHEGDHVRAGEALMDG
SSNPHDILRVLGQKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVKDVGDTN
LLIDDQIERWVFEEENEKAMDKGGRPATAESLLLGITKASLSTESFISAASFQETTKVLT
QASIEGKIDSLRGLKENVIMGRLIPAGTGLALYRNLRMVAEEPVIIPEPVEPEDEEIYEE
EA
NT seq 4149 nt   +upstreamnt  +downstreamnt
ttggaagacatttttaattttttcgataagccgaaggacccgctccacttctcttccatc
aagatctcgatctcctcgccggacaagatccgcgagcgttccttcggggaagtgaagaaa
ccggaaaccatcaactaccgtaccttcaaaccggagcgcgacggcctcttctgcgccaag
atcttcggaccgaccaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcccctccaaggtgcgccgcgag
cgcctgggtcacatcgacctggccaccccggtggcacacatctggttcctgaagtcgctc
ccgtccaggatcggcaacttgatggacatcaccctgaaggacctcgagaaggtgctctac
ttcgaggcttacgtggtgaccgacccgaaggagaccggccttgccttcggcaccgtcttc
tccgaggaccagtaccagaaggcgctcgaggagtacagctacggcttcgaggccggcatg
ggggctgcggctatccgcacctgcctcacctcgatggacctggaccagctctccgagcag
ctccgcatcgagatgcaggaggcaacctcggaggccaagcgcaaaaagacggccaagcgc
ctcaaggtcatggaggcgttcaagaactcgggcaacaagcctgagtggatgatcctcgag
tgcatcccggtcctgccgccggaactccgcccgctggtccccttggacggcggccgcttc
gctaccagcgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcttgaaa
cgcctgatggagctgcaggcccctgaggtcatcatcaggaacgagaaacgcatgctgcag
gaggcggtcgacgcgctgttcgacaacggccgccgcggccgcgccatcgccgggcccaac
aagcgtccgctcaagtcgctctccgacatgctcaaggggaagtcgggtcgcttccgtcag
aaccttctcggtaagcgcgtcgactactccggccgttccgtcatcgtcgtcggtccggaa
ctgcgcctgcaccagtgcggtctgccgaagaagatggctctcgagctcttcaagccgttc
atctacaacaagctcgaggagcgcggcttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagaagccggaggtctgggacgtgctggaggaggtcatcaaggagcatccg
gttctcttgaaccgcgccccgactctgcacaggctcggcatccaggccttcgaacctgtt
ctgatcgagggtaaagcgatccagctccacccgctggtctgcaccgccttcaacgccgac
ttcgacggcgaccagatggcggtccacctccccctctccgtggagagccaggtggaggcg
cgcgtcctcatgatgtcgaccaacaacatcctgtcgcctgcgcacggcaagccgatcatc
gtcccttcgcaggacatggttctcggcatctactacatgacccgcgagaagcacttcgcc
ctgggcgaagggaaaatcttcgcctccgccgacgaggtcaacatcgcctgggacgctggt
gagatccacctgcaggcgcgcatcaaggtcaggatgaagaacctcgtctccgacgagaag
ccgaccctgatcgagaccaccacaggccgcgtgcttctgcgcgacatcctgccggacgcg
gtgccgtatgcgaccatcaacaaggtcatgaccaagaaggaactctccaacctggtggac
gtctgctaccgtctggccgggaacaaggagacggtcattctcgccgacaagctgaaggcg
atcggtttccgttacgcggcgaaagcgggcatttccatctcgatcaacgacatggtcatc
ccggaaggaaagccggccatcatcacccgcgccaccgaagaggtgcaggagatccagaac
cagtacaccgagggtctcatcaccgacggcgaacgctacaacaaggtcatcgacatctgg
gcgaaatccaccgaggacatcgccaaggagatgctggacaacctctcccgcgacaccatc
ctcgatccggaaggcaaagaagtgaaggtcccctccttcaacgcgatccacatgatggcc
gactcgggcgcaaggggtagcgcgcagcagatccgccagctggcagggatgaggggactc
atggcgaagccttccggcgagatcatcgagaccccgatcaccgcgaacttccgcgagggt
ctcaccgtgctccagtacttcatctccacccacggcgcacgtaagggtctggccgatacc
gcgctcaagacggcgaactccggctacctcacccgccgtctggtcgatgtcgcccaggac
gccatcatcaccgaggcggactgcggcaccatcgacgggcttaccgtctcctccctcacc
gagggtggcgaggtcatcgagcacatcggcgaccgcatcctggggcgcgtggcactggac
gacatcctcgacccggtcaccggcgacgtgctggttccggccaacgaggagatcgacgag
aaccttgtggcaaggatcgaggctgcgggtctggagaaggtcaagatccgttcggtgctc
acctgcgagagccgccgcggcatctgcgccaagtgctacggccgcgacctggcacgcgga
caccttgtgaaccgcggcgaggcggtcggcgtcatcgccgcccagtccatcggcgagccg
ggtacccagctcaccatgcgtaccttccatatcggtggtacggcttccaggcgcgccgag
cagaccgcgttggaggcgaggaacgagggtttcgccaagttcatcaacatcaactacgtc
accaactcggaagggcaccacatcgtcatgaaccgcaacggcgaactcgccatcgtggac
gagaccgggcgcgagcgcgagaagtacggcgtcgtctacggtgcgaagatcaaggtgagc
ccgcaagagaaggtcacccaggggcagtcggtcgccgagtgggacccgtacaccatgccg
atcctcaccgagatcgccggccgggtcaagttcggggacgtcatcgagggtgtcaccatg
gaggagcaggtcgacgaagtcaccggtctctccaggaaggtcatcatcgagacccgcgac
gccgacaagcgcccgcgcatcaccatcaaggacgagagcggcaagaccgcgaagatcggc
gacagccttttggcccgctactacctcccggtaggctccaacatcaacgtgctggaggat
accgaggtgaacgcaggcgacgtgatcgccaagattccgcgtgaaacaaccaagaccaag
gacatcaccggcggtctgccgcgcgtcgccgaactcttcgaggcgcggaagcccaaggac
ttcgcggtcatcaccgagatcgacggcgtggtcgccttcggcaaggacgccaaggggaag
cgcaaggtcctggtcaccccggaactcggcgagccgaaggaatacttgatccccaaaggg
aagcacataagcgtccacgaaggggaccatgtccgcgccggcgaggcgctcatggacggc
tcttccaatccgcacgacatcctgcgcgtcctgggccagaaagaactggccaagtatctg
gtcgacgaggtccaggaggtgtatcgactccagggcgtcaagatcaacgacaagcacatc
gagaccatcgtacgtcagatgctgcgccgcgtcagggtcaaggatgtgggcgataccaat
ctgctcatcgacgatcagatcgagcgctgggtctttgaggaagaaaacgaaaaggcgatg
gacaaaggcgggcgtcctgcaaccgctgagtcattgctccttggcataaccaaggcgtcg
ctctctactgagtcatttatttctgctgcttccttccaggagacaacaaaagtattgaca
caggcgtcgattgaaggtaagatcgatagtcttcgcggtctcaaagagaacgtgattatg
ggccgcttgatcccggcgggaacgggattggctctttaccgcaacctacgcatggttgct
gaggagccagtaatcattccggagccagttgaaccggaagatgaagaaatctacgaagaa
gaagcctag

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