Gemmata sp. SH-PL17: VT84_21640
Help
Entry
VT84_21640 CDS
T04358
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ges
Gemmata sp. SH-PL17
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_21640 (sbcC)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VT84_21640 (sbcC)
Archaeal homologous recombinant proteins
VT84_21640 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_29
AAA_27
SbcC_Walker_B
AAA_15
AAA_21
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AMV27020
UniProt:
A0A142XKM8
LinkDB
All DBs
Position
complement(5091370..5094504)
Genome browser
AA seq
1044 aa
AA seq
DB search
MIPQRIKLSGFLSYKDEQEIRFDGAPLWMLSGTNGSGKSSVFDAVTFALFGHHRGGSQSA
AELVNKEATTLSVEFDFTSEKQLYRIKRTVRKRQSGVASTQQVLKFTNSEITGESWEAVS
GTEYKAKFDTWVRDKIGLDYETFTSSVLLLQGKSEKLLDSTPAGRAGVLARIVDLERYQK
LHGKADDKRRALKSELEGITNQLLGVKEVSEEEYAEVERSITTLEEARTTAQVRIDNLNA
LELRARRWTDTQAKLAGVKLKLADAERLLGTAIAIEKDYTRLRELRDVLPAVNTIVTERG
RIGASERNTERLTKEREEVADTRRKSENVLAQGRKKLAALKKTQSEDETKKAQLEARLRE
LTAVLEKVKQVEDAESEVSRLETELQPFPADPDSAVRKYQTEHERLALLAQHVALLERLH
QDRSELTKAVTTEKQARTDEAKLKSDGVKAKEEFTRLEIDAKAAREDRAAKDQLMAETRA
LARQARELADEFKTMTGQTKCRACGQKLTPEHFADEKKTREANAKKSEDKLKTLTTEAEK
ARKLEDELGAKEVTERKRLSDLRDKWKDADAALKQTASDIKRLTDACRQTYFALPDEFKS
KLGPTEPSDWFAVTYPNRQDLAALNDEARGIDVTKRKLKAAQDEAKKIETLRAKLDSARE
RLTRAQRGLPGGDPGALRQEFAGKQSEEKSVTSSLTANKKEIAATEAEIERYQRSVSESD
RELTEIAGKLNLEESSRKQSAEAIERAKKTLPAAWQKPLENAGLTDRAKWQDELDALVGK
NTEAKYTQLQAARGGLDPLRAEIKQLEAESDSFPEEERRSPEDVRNEAAAARKELDSRNK
ELLDAQGRKRILDGYRQQRYELSERFKAVDAEHNRHKTLAELLGRDRLQRHLVRQAERQI
VDYANAVLDRLSGGQLFMRLVEAETGTDKALDLECANRVTGGGAINVAFLSGSQRFRVAV
ALALGIGQYASKQHRPIESVIIDEGFGCLDRSGRQVMIQELQNLRGHLHCILLVSHQEEF
ADAFPDGYRFELQDGATRVSRFVR
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgcaacgaatcaaactgtccggcttcctgtcgtacaaggacgaacaagaaatc
cggttcgacggggcgccgctgtggatgctctcgggcaccaacgggagcggcaagtcgagc
gtgttcgacgcggtcacgttcgcgctgttcggccaccaccgcggcgggagccagagcgcc
gcggagttggtgaacaaggaagcgaccaccctaagcgtggagttcgacttcacgagcgag
aagcagctctaccgcatcaagcgcaccgtgcgcaagcgacaaagcggcgtggccagtaca
caacaggtgttgaagttcacgaacagtgagatcacgggcgagtcgtgggaagctgtgtcc
ggcaccgagtacaaggcgaagttcgatacctgggtgcgggacaagatcggcctcgattac
gaaacgttcacgtcgtcggtgctgctacttcagggtaagtcggagaaactgctcgacagc
acccccgctgggcgcgccggcgtcctcgcgcgcattgtcgatttggagcgctaccagaag
ctccacggcaaagccgacgacaagcgtcgcgcgctcaagagcgaactcgaagggatcacc
aaccagctcctcggcgtgaaagaggtgagcgaagaagaatatgccgaagtcgaaaggagc
atcacaacgctggaagaagcgcgaaccacggcacaagtccgcatcgacaacttgaacgcg
ctggaactgcgtgcccggcgctggaccgatacccaggccaaactcgcgggagtaaaactg
aaactcgccgacgccgagaggctgctcggcaccgcgatcgccatcgagaaggactacacg
cgcctccgggaactccgtgacgtgctccccgcggtgaacaccatcgtcaccgagcgcggg
cgcatcggcgcgtccgagcgcaacaccgagcgccttaccaaagagcgcgaagaggtcgca
gacacgcggcgcaagtccgaaaacgtgctcgctcaaggccgcaagaaacttgcggcgctc
aagaaaacacagtccgaggacgaaacaaagaaagcgcaactcgaagcacgactccgcgaa
ctcacggccgttctggagaaggtgaagcaggtcgaagacgcagagagtgaagtctcgcgc
cttgaaacggagctacagcccttcccggccgaccccgattccgcggttcgcaagtaccag
accgagcacgagcgcctcgcgctcctggcacaacacgtcgcgctgctcgaacgacttcac
caagaccggtccgaactcacgaaggccgtcaccacagaaaaacaggcccgcacggacgaa
gccaagctcaagtccgacggcgtgaaagccaaggaagaattcacgcgcctcgaaatcgat
gcgaaagccgcgcgcgaggaccgcgccgcgaaggaccagttgatggccgaaacgcgggca
ctcgcccggcaagcgcgcgaactcgccgacgagttcaaaacgatgaccggccagacgaag
tgccgggcgtgcggtcaaaagctcaccccggaacacttcgcggacgaaaagaagacgcgc
gaggcgaacgcgaagaagtccgaagacaagctgaaaacactgaccacggaagcggaaaaa
gcccgcaaactggaagacgaactcggtgcgaaagaagttaccgagcgcaagcgtttgagc
gacctgcgcgacaagtggaaggacgcggatgccgcgttgaagcagaccgcgagcgacatc
aagcgcctcacggacgcctgccggcaaacgtacttcgcgctcccggacgagttcaaaagt
aagctcggtccgactgaaccatcggactggttcgcggtcacgtaccccaaccgccaagac
ctcgccgcgctcaacgacgaggcgcgcgggatcgacgtgaccaagcgcaagctaaaagcc
gctcaggacgaagcgaagaaaatcgagacgctccgcgcgaagctcgactccgcccgggag
cgcctcacacgtgcccagcgcgggctgcccggcggcgatccgggcgcgctgcggcaggaa
ttcgcgggcaagcagagcgaagaaaagagcgtgaccagttcgctcaccgcgaacaaaaaa
gagatcgccgcaaccgaggcagaaatcgagcgctaccaacgttctgtaagcgaatcggac
cgcgaactgactgagatcgcgggcaaattgaacctcgaagaatcgagccgcaagcagagc
gcggaggccatcgagcgcgcgaagaagacgctccccgcggcgtggcaaaagccgctcgaa
aatgcgggtctgaccgatcgcgcgaagtggcaggacgaactcgacgcgctcgtcggcaag
aacaccgaggcgaagtacacgcaactccaggccgcacgcggtgggctcgatccgctccgg
gccgaaatcaagcaactcgaagccgagtcggactcgttcccggaagaagaacgccggtcg
cccgaagacgtgcgcaacgaagctgcggccgcgcgcaaggaactggattcgcggaacaag
gaactactcgacgctcaggggcgcaagcgcatcctcgacggttaccgccagcaacgctac
gaactcagcgagcgcttcaaagcggtggacgcagaacacaaccggcacaaaacgttggcg
gaactgctcgggcgcgaccggctccagcgccacctcgtccggcaagcggagcgccagatc
gtcgactacgcgaacgcggtactggaccgtctgagcggcgggcagctcttcatgcgcttg
gtggaggcggaaaccggcacggacaaggcactcgacctcgaatgtgccaaccgcgtgacg
ggcggcggtgcgatcaacgtcgcgttcctgagcgggagtcagcggttccgggtcgcggtg
gcgctagctctcggcatcggccagtacgcgagcaagcagcaccgaccgatcgaaagcgtc
atcatcgacgaaggcttcggctgcctcgaccgcagcggccgacaggtgatgatccaggaa
ttgcagaacctccgcgggcacctgcactgcatcctgctggtatcgcaccaggaagagttc
gccgacgccttccccgacggctaccgcttcgagttacaagacggcgcgacacgggtgagc
cggttcgtgaggtag
DBGET
integrated database retrieval system