Geospiza fortis (medium ground-finch): 102034543
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Entry
102034543 CDS
T03755
Symbol
BRCA1
Name
(RefSeq) BRCA1, DNA repair associated
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03440
Homologous recombination
gfr03460
Fanconi anemia pathway
gfr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102034543 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
102034543 (BRCA1)
03460 Fanconi anemia pathway
102034543 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gfr01009
]
102034543 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102034543 (BRCA1)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102034543 (BRCA1)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102034543 (BRCA1)
Enzymes [BR:
gfr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102034543 (BRCA1)
Protein phosphatases and associated proteins [BR:
gfr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102034543 (BRCA1)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102034543 (BRCA1)
Multi subunit Ring-finger type E3
BRCC complex
102034543 (BRCA1)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102034543 (BRCA1)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102034543 (BRCA1)
BRCA1-A complex
102034543 (BRCA1)
BRCA1-B complex
102034543 (BRCA1)
BRCA1-C complex
102034543 (BRCA1)
BRCA complex
102034543 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
102034543 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
BRCT_2
zf-Nse
zf-C3HC4_3
zf-RING_6
zf-RING_5
zf-RING_10
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
102034543
NCBI-ProteinID:
XP_005429630
UniProt:
A0A6I9HU72
LinkDB
All DBs
Position
Un
AA seq
1794 aa
AA seq
DB search
MDFSVITIGQVQNVLSAMQKNLECPICLDVVQEPVSTKCDHIFCRFCMFKLINKKKKGVV
ECPLCKTEVTKRSLKENSRFKQLIEGLLETIHAFELDTGVKFLKSHHFPKTSTEATAAES
LCKESSVIQSKGFRNRRKSAKGNGQENFTLQQASVNIQLTDAKMCHPRNKPQKSGSQKGT
YIEFGSESSEEFFKQTTKTGFEDKGAVQISSQGRLEELESAEKGNENSCNAQPDKLYAKE
ITLPDITGEGDFSKECLSKKSSQSITECAKPDQGNVTGCQSSPLDVLAVELLPEQCDRTG
DASPTLNGDTSFFRNTEEMGEQQSQHNSEHQESDLEDSLENRLDKSREMDTDGQSVEAAE
GYEPENDSSQDKELPLEELPQAETLHSATLNKVSKKRLKQSIQKVNEWFSKSNEILSSNS
SVDESAASADVSGEGDLCLSDKESCISGRTDPMADSMGIAAVEGKKRWSKQTAEDIKDKI
FGKTYKRGRKSNPPSTLRDILPTRQKEDVAAAECLKDFSKDRLKRKRKTACVLQPEDFIK
KKDTEKADGGPQSVNGGLGDAEKKSCDESVAVNESHLSQNRANNTLTEPEEGGESTWKKA
TEKVPTKRCDGEPEMYNCDQKSTKRRSSSAKRCRHSSRTMCALQLVVDRGSVFPDPAEPQ
IDSYPSSGEPRKADPEQNPVRRSRRLQLLSEEMTKETRKRVKGARNNSDHGRSVSGDQRN
VAAHSAECKDLCEPQDELSYRPVTNLEGGNLEANEAQVNLKNLSDAAETGKSLFSPSCLP
SNCGSTVPDTGSQDSRILGSPLLLQLPSVSAGQTASPQTEGVTESPAAAPTECRHDSQNV
PGDFKAEKLPVAKNVLELTKEAEDSDLDTQYLRNIFRHSKRSSFSLFQTRAVADPPSETF
NLSCAAQVENKASKQLQPESLQEEKTAAQNLSRVSEKDEEKEKLKTCESARVDPVPCFAV
STGEHRDGISQAAEEGILTPARAGTAQTEHKNGLLQEEQGNEKPVSNEIGIESELRQNPI
ESDGSQSDQSNTEEHDSRQNYLNTGQENSFSSESNQAGKTEVVDCTEPVLHFQSTSMICS
ATCQQSTAELSCEVTRTKSRTRERKGVKGNEEEAAQTVSTAAEALEEPLGENCGLTGLSG
TPKALLCSDTDIEENTSLCETDRKEQSAVFVKSDSAELQSRNANSKPRPRGPRKSRRRVQ
KLPSSDEESCEDEELPCFRTLIFSKSASTPLQTDKQMAPVVESPVAECPGSPTVSNDGNV
VQKVPEASLSHACASPSQESECSVNLFSSQSNMSEESLNGAQELNKHLPQAQVSKQMSSV
NDSKETSQNSSGGLKETKDESQEDPDMGANLGEASGSDSEISIVEDSCGAFSQGEILTTQ
QKNAMQNSLKKLQQEMAALEAVLKQNGSQNCEVLPVQRELPHSSTEGASEMDQTREAKNR
SPELLLSASKSSLRKRSDLEKGPGCDNVLQNKTPSEKTKPVQEHRQCQLEAENAEEQKSG
TRQNSASVSSDLFGDVTQSPDNSSSSLRLFTPQSGEATAGPVVAQNTDKSSGPGHKFKKS
ECFPEPVLHNATGKENTTNPVGTKRKEMSIVVSGLNHSEHLVVQKFVKKTQSTLSNHITE
GTTHVIMKTDEELVCERTLKYFLGIAGGKWVVGYQWIIQSFKAGRILDEENFEVRGDVIN
GRNHQGPKRARQALTEKIFKDFEICCCGPFTDMTTEHLEWMGELCGASVVKQPDLFTPTA
NSTAVVVVQPDAWKENMDYGAIQQQSNVALVTREWVLDSVACYQCQELSAYLMS
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtgattactattggacaagtacaaaatgtgctttcagctatgcagaag
aacttggagtgcccaatatgcctggatgtggtgcaagagcctgtctcaacaaaatgtgat
cacatattctgcagattctgcatgttcaaacttatcaacaaaaagaaaaaaggtgtggtg
gagtgtcctctgtgtaagactgaagttaccaagagaagtctgaaagaaaattccagattt
aagcaactcattgaaggactgttggaaactatccatgcttttgagcttgacactggagtg
aagtttttaaagagtcatcactttcctaaaacatccacggaagccactgctgctgagtcc
ctgtgtaaagaaagttctgtcatccaaagtaagggcttcagaaacaggaggaaaagtgct
aaaggaaatggacaagaaaacttcaccttgcagcaagctagtgtgaatattcagcttaca
gatgccaaaatgtgtcacccaagaaacaaaccccagaaatctggttctcaaaagggtact
tatatagagtttggctctgaatcatctgaagagttttttaaacagacaaccaaaactggg
tttgaagacaaaggagcagttcagatttcttctcaaggaaggctggaagaacttgagagt
gctgagaaagggaatgaaaattcttgtaatgcacagcctgacaagctgtatgccaaagaa
ataacactgccagatatcacaggtgaaggtgatttctcaaaggaatgtttgagcaagaaa
agctctcagagcatcactgaatgtgccaaacctgaccaagggaatgtgactggatgccag
agctctcctttggatgttcttgctgtagagctgctcccagagcagtgtgacagaacaggg
gatgccagtcccaccctgaatggggacacatcattctttaggaacacagaagaaatgggg
gagcagcaaagccagcacaacagtgaacaccaagagtctgatttagaagatagcttggag
aacaggctggataaaagcagggaaatggatactgatggacaaagtgtggaagctgcagag
ggatatgaacctgagaatgactcttcccaggacaaagaacttcctctggaggagctacct
caggcagagacccttcactctgccaccctgaataaagtctccaagaagagactgaagcag
agcattcagaaagtcaacgaatggttttcaaaaagcaatgagattttgtcttccaattct
tcagtggatgaatctgctgcatcagctgatgtttcaggtgaaggagatctgtgtttatca
gataaagagtcctgtatttcaggaaggactgaccctatggcagattccatgggaattgca
gcagtggaaggaaaaaagaggtggtcaaaacaaacagcagaagacattaaagacaaaata
tttggcaaaacatacaagagagggaggaaatcaaatcccccttctaccttgagagacatt
ttgcctactaggcaaaaggaagatgtggctgctgctgagtgcctgaaggatttcagcaaa
gacagactcaaacggaagaggaagactgcgtgtgtcctgcaacctgaggatttcatcaag
aaaaaagatacagaaaaggcagatgggggccctcaaagtgttaatgggggccttggagat
gctgaaaagaaaagctgtgatgaaagtgttgctgttaatgagagtcacctctctcagaat
agagcaaataatacattaacagagcctgaggagggaggagagtccacatggaagaaagct
actgagaaggtccctaccaagcgctgtgatggggaaccagaaatgtataactgtgatcag
aaaagcaccaagaggagaagttcttcagcaaaaagatgcaggcattctagtagaaccatg
tgtgctctgcagttagtggtggacagaggctctgttttccctgatccagctgagccacag
attgacagctacccaagcagtggagagcccaggaaagctgatcctgagcaaaacccagtc
agacgcagcagaaggcttcagttactctctgaagaaatgacaaaagaaacaagaaaaaga
gtaaagggagccagaaataacagtgatcatggaaggtctgtctctggagaccaaaggaat
gtggcagctcactctgctgagtgcaaagacctgtgtgagcctcaagatgagttgagttac
aggccagtcactaatttggagggaggtaatctggaagcaaatgaagcgcaggtgaatcta
aagaatttatctgacgctgcagaaactggaaaaagtctgttcagtccttcatgtctgcct
tcaaactgtggttccactgtgcctgatacaggttctcaagacagcagaatacttggtagc
cccctcctcctgcagcttccttcagtgtctgctgggcaaactgcttctccccagactgag
ggggtgactgaatcacctgctgctgctcccacagaatgtaggcatgattcacaaaatgtt
ccaggggatttcaaagctgagaagttgccagtggctaaaaatgttttggaattgactaag
gaagctgaagacagtgacttggacacacaatatctgaggaatatattcaggcattccaag
cgctcctccttcagcctttttcagactcgtgctgtggcagatcctccttctgaaaccttc
aatctatcatgtgctgctcaggtagaaaataaggctagcaaacaattacaaccagaaagc
ttgcaagaggagaaaacagctgctcaaaacttgagcagggtttctgagaaagatgaagag
aaagagaagcttaagacctgtgagtctgcacgtgttgatcctgtgccttgctttgctgtc
agcacaggagagcacagggatggcatttcacaggctgcagaggaagggattctgacacca
gcaagagcagggactgctcagactgagcacaaaaatggattgctacaagaagagcagggc
aatgaaaagccagtgtcaaatgagatagggatagaaagtgagttgagacagaatcccatt
gaaagtgatggaagccagagtgatcagagtaacacagaggagcatgattccagacaaaat
tatttaaacacaggccaggaaaacagcttcagttcagaaagcaatcaggcaggaaagact
gaagttgttgattgcacagaaccagttctacattttcaatccacatcaatgatttgttct
gcaacttgtcagcaaagcactgctgaactcagctgtgaagtcactaggacaaagagtaga
acaagagaaagaaaaggtgtaaaggggaatgaagaagaagcagcccaaactgttagcaca
gctgcagaggctctggaagaacctcttggagagaattgtggccttacaggtttgtctgga
acccccaaggccttactgtgctctgatactgacattgaggagaacaccagcttatgtgag
actgataggaaagagcaatctgcagtgtttgtaaaaagtgacagtgcagaactgcagagc
agaaatgcaaattctaaaccaagacctcgaggtcctcgaaagtctcgaaggcgagtgcag
aaactgccatcttcagatgaagagtcctgtgaggatgaggagttaccctgctttaggaca
ctcatcttcagcaaatcagcaagcacacctttgcagactgataaacaaatggcacctgtg
gtggagtctccagtggcagagtgtccagggagtcccactgtgagtaatgatggcaatgtt
gtgcagaaagtgccagaagcttccctaagtcatgcctgtgcttcaccaagccaggagtca
gaatgctctgtcaacttattttcttcccagtccaacatgtctgaggaatcacttaatgga
gcacaagagctgaacaaacatttaccacaagctcaggtgtccaaacaaatgagcagtgta
aatgacagtaaagaaacttctcagaattctagtggagggctgaaggaaaccaaagatgaa
agccaagaagacccagacatgggagcaaacctaggtgaagcatctggatctgacagtgaa
ataagtattgtagaagattcctgtggagcattctctcagggtgaaatcctcaccacccag
caaaagaatgctatgcaaaatagcctgaaaaaacttcagcaagaaatggctgcacttgaa
gcagtgctaaagcagaatgggagccagaactgtgaagttttacctgtccagagggaactg
ccacattccagtactgaaggagcatctgaaatggatcaaacaagagaagcaaaaaacagg
tccccagaattgctgctttcagcttctaaatcctctttaaggaagagatcagatctggag
aaaggccctgggtgtgacaatgttctacagaacaaaactccctctgaaaagacaaaacca
gtgcaggaacacaggcagtgtcagcttgaagcagaaaatgcagaggagcagaaatctggg
accagacaaaacagtgcatctgtgtcatcagatctttttggagatgtgacccagagtcca
gataattcttcctcctctctaagactttttacccctcaaagtggagaagccacagctggg
cctgttgtggctcagaacactgataaaagctctggcccaggacacaaatttaaaaaaagt
gaatgttttcctgaacctgttctgcacaatgcaactgggaaagaaaatactacaaatcca
gtggggaccaagaggaaagaaatgtcaattgtggtctcaggtctgaatcacagtgagcat
ttggttgtccagaagtttgtgaaaaaaactcagagcactttatctaatcacattactgaa
ggaacaacccatgtcataatgaaaacagatgaggagctggtgtgtgaacggaccctgaag
tatttcctgggcattgcaggaggaaaatgggtggttggttatcagtggataattcagtct
tttaaagcaggaaggatactggatgaggagaactttgaagtcagaggagatgtaatcaat
gggagaaaccatcaaggtcccaagagggccagacaggccctgacagaaaagatctttaaa
gattttgagatctgttgctgtggacccttcactgacatgactacagagcacctggagtgg
atgggggagctctgtggtgcctctgtggtgaagcagcctgacctgttcacacccacagca
aattctacagcagttgtggttgtgcagccagatgcttggaaggaaaacatggattatgga
gcaatccagcagcagagcaacgttgccctggtaactcgggagtgggtcctggacagcgtg
gcttgctaccagtgccaggagctcagtgcttacctcatgtcctga
DBGET
integrated database retrieval system