Gallus gallus (chicken): 419100
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Entry
419100 CDS
T01006
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
gga
Gallus gallus (chicken)
Pathway
gga03013
Nucleocytoplasmic transport
gga03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
419100 (UPF2)
03015 mRNA surveillance pathway
419100 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
419100 (UPF2)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
419100 (UPF2)
mRNA cycle factors
P-body specific factors
419100 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
419100
NCBI-ProteinID:
XP_015153052
CGNC:
5054
Ensembl:
ENSGALG00000033772
UniProt:
A0A8V0XT80
LinkDB
All DBs
Position
1:complement(6752363..6807897)
Genome browser
AA seq
1293 aa
AA seq
DB search
MPAERKKSANMDEKESLLNNKEKEFVERRPVSTREKPKDDVKVGVKRETVKVPEDKKKKL
DEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKHEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADILD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQSKDASKDESRDSKDAKDNKEAAPGSEDLELELENLDINDDPLELDCGDEA
EDLTKKLLDEQGKREGADSTGADSSDGKQAERKQEDEEASTGSHLKLIVDAFLQQLPNCV
NRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAED
LCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHH
IEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPP
AEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDTEVKDYVICCMINIWNV
KYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELY
NYRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSK
RKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCSSLEEAIRQ
VQDLEREFLIKLGLVNDKDSKDTITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEE
GSDNEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDK
MMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRKGN
KQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRP
APANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagtcagcaaatatggatgaaaaagaatctctgctaaataat
aaagaaaaagaatttgttgaaaggcgaccggtgagcaccagggagaaaccaaaagatgat
gtcaaagttggggtaaagagagagactgtaaaggttcctgaagataaaaagaaaaaactg
gatgaggataaaagaaaaaaagaggacaaagagaggaagaaaaaggaagaggataaagtg
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaaacatgaagaggaa
gagaaaaagaagcaagaggaggaagttaaacgtcaacaagaagaagcagctgctcagctg
aaagaaaaagaggaagcacaccagttgcatcaggaggcttgggagcgccatcaggcaagg
aaggagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagattagactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccacgattttaatagcctaaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatatcagatgtgaactgt
gctgtgcacttgtgttctctctttcaccagcgctatgctgattttgccccttcgttactt
caggcttggaaaaagcattttgaagcaaggaaagaagagaagactcccaacattacaaag
ctaagaactgatttgcgtttcattgcagaattgactatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcaacttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggtgatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tcattgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaagggtgaactgagtgaagatcgacataagcaatatgaggaa
tttgcgatgtcttatcagaaactgttggcaaattctcagtctctagctgatattctggat
gaaaatatgcctgaccttccccaggacaaaccaacacctgaggaacatggacctggcatt
gatattttcacaccaggaaagcctggagaatatgacctggaagggggtatctgggaagat
gaggatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataacgaaaagtgttctcagagcaaggatgccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctcctgggagtgaggatttggagctg
gagctggagaacctggatattaatgatgatccgctggaattggactgtggagatgaagcg
gaagatcttacaaaaaagcttcttgatgaacaaggcaagagagagggagcagatagcacc
ggagctgacagtagtgacggaaaacaagctgaaagaaaacaagaggatgaagaagccagt
actggatctcatttaaaacttatagttgatgcttttcttcagcagcttccaaactgtgtg
aacagagacctcatagacaaggcagccatggatttttgcatgaatatgaatacaaaagcc
aacagaagaaaactagtacgagcacttttcatagttcctaggcaaaggttggatttgcta
ccattttatgcaaggctggttgccacattgcatccctgtatgtctgatgtagcagaggat
ctttgttccatgctgaaaggggatttcagatttcatgtaagaaaaaaggaccagatcaac
attgaaacaaagaataaaactgtgaggtttattggtgagcttaccaagtttaagatgttc
tccaagaacgatactctccactgtttaaagatgcttctgtcggacttttctcatcaccat
attgaaatggcatgtactctgttggaaacctgtggaagatttctctttagatcaccagaa
tctcacctaagaaccagtgttcttttggaacaaatgatgagaaaaaaacaagcaatgcat
cttgatgcacgctatgttacaatggtagaaaacgcctattactactgtaatcctccacca
gctgaaaaaactgtgaagaagaaacgtcctcccttgcaggaatacattcgtaagcttctt
tacaaggacctctcaaaggtcaccacagagaaggttctgagacagatgcgcaagctgcct
tggcaggatacagaagtaaaagactatgtcatatgctgcatgatcaacatctggaatgtg
aaatacaatagcattcactgtgtagccaacctcttagcagggttggtcctttaccaggaa
gatgttggaattcacgttgtggatggagtgctagaggatattcgactaggaatggaggtt
aaccagccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggagctttac
aattaccgaatggtggaatcagctgtaatatttcgaactctatattcattcacatcattt
ggtgtgaaccctgatggtagtcctagtccattggatcctccagagcatcttttcagaatc
agacttgtatgtacaatccttgatacctgtgggcaatattttgacagaggatccagcaaa
cgaaaactcgattgcttccttgtatactttcagcggtatgtttggtggaagaaaagtctg
gatgtctggacgaaagaccacccatttcctatagacattgactatatgattagtgataca
ctggaactcctcagaccaaagataaagctctgcagttctctggaagaagctattagacag
gtgcaagacttggaacgagaattcttaataaaactagggcttgtgaatgacaaagattcc
aaagataccattacagaaggggagaatctggaagaggatgaagaagaagaagaaggtgga
gcagaaacagaggaacaatctggaaatgaaagtgaagtcaatgagccagaagaagaggag
ggctctgacaatgaggaagaggaaggcgaagaagaggaggaagaaaacactgattatctt
acagattctaataaggaaaatgaaacagatgaggaaaatacagaagtaatgattaaagga
ggaggacttaagcacgtcccttgtgcagaagatgaggacttcattcaggcgttagataaa
atgatgttggaaaatcttcagcaacggagtggtgaatcagttaaagtgcatcagctggat
gttgctattcctctgcatctcaaaagccaactgaagaagggtcccccacttggaagtggg
gaaggagagtcagagtctggagacaccatgccctttgtcatgttaacacgaaagggcaac
aaacagcagtttaagatcttaaatgtaccaatgtcttcccaacttgctgcgaaccactgg
aaccaacagcaggctgaacaggaggagagaatgcggatgaaaaagctcactttggatatc
aatgaacgccaagaacaagaagactaccaggaaatgttgcagtctctggcacagcgtcca
gctccagcaaatacgaatcgtgaacggcgacctcgttaccagcatccaaagggagcacct
aatgcagatctaatctttaaaactggtgggaggagacgttga
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integrated database retrieval system
