KEGG   Geobacillus sp. GHH01: GHH_c02470
Entry
GHH_c02470        CDS       T02455                                 
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
ggh  Geobacillus sp. GHH01
Pathway
ggh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ggh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GHH_c02470 (cshA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ggh03019]
    GHH_c02470 (cshA)
   03009 Ribosome biogenesis [BR:ggh03009]
    GHH_c02470 (cshA)
Enzymes [BR:ggh01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     GHH_c02470 (cshA)
Messenger RNA biogenesis [BR:ggh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GHH_c02470 (cshA)
Ribosome biogenesis [BR:ggh03009]
 Prokaryotic type
  rRNA helicases
   GHH_c02470 (cshA)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_19 Helicase_RecD
Other DBs
NCBI-ProteinID: AGE20830
UniProt: L7ZSZ6
LinkDB
Position
232411..233814
AA seq 467 aa
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH
PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRITAH
NT seq 1404 nt   +upstreamnt  +downstreamnt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgactccgattcaagcaaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaacggggaaaacggcggcgtttggcattccgatc
gtagaaaaagtggatgtgaaaaacggcgccattcaggcgcttgtggtcgcgccgacgcgt
gagctcgccatccaagtatcagaagagctgtacaaaatcggcgccgtcaagcgcgtgcgc
gttttgccgatttacggcggtcaagatatcgagcggcaaatccgtgctttgaaaaaacat
ccgcacgtgatcgtcgggacgccgggccgtattatcgaccatatcaaccgcgggacgctc
cgccttgagcatgtgcatacggtcgttctcgatgaggcggatgaaatgctcaatatgggc
tttatcgaagatattgaggcgattttaagccatgtgccggccgagcggcagacgttgctg
ttctcggcgacgatgccggatccgattcgccgcattgccgagcgcttcatgaacgagccg
gaacttgtcaaagtgaaggcaaaggaaatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttcttgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcgtcgtgtcgatgagctggcggaggcgctc
aacttgcgaggctatgcagcggaaggcattcacggtgatttaagccaagcgaaacggctg
tcggtgctgcgcaagtttaaggaaggtgcgattgaaattttagtggcgacggatgttgcg
gcgcgcggcttggatatttccggcgtaacgcacgtgtacaactttgatattccgcaagac
ccggaaagctatgtccaccggattgggcgcaccgggcgcgccggcaagacaggggtggcg
atgacgtttgtcactccaagggagatcggccagcttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccgacacttgatgaggcgctcgaaggccaacagcgt
atcgcgatcgaaaagcttctcaacgtcgtggagaccgaaaacctgtcattttacaaacgg
gcagcggaagaattgcttgaagagcacgattcggtaacgattgtcgctgcctgcttgaaa
atgttgacgcgcgagccggatacgacgccggtgcaattgacggaagaaccgcctttagcg
gtcaagcgggagaaaaaacggggcggccgcccggacggctcagcccgcagccggacgaag
aaacggcggattacggcgcattaa

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