Geobacillus sp. GHH01: GHH_c02470
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Entry
GHH_c02470 CDS
T02455
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GHH_c02470 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggh03019
]
GHH_c02470 (cshA)
03009 Ribosome biogenesis [BR:
ggh03009
]
GHH_c02470 (cshA)
Enzymes [BR:
ggh01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
GHH_c02470 (cshA)
Messenger RNA biogenesis [BR:
ggh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GHH_c02470 (cshA)
Ribosome biogenesis [BR:
ggh03009
]
Prokaryotic type
rRNA helicases
GHH_c02470 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGE20830
UniProt:
L7ZSZ6
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All DBs
Position
232411..233814
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AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH
PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgactccgattcaagcaaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaacggggaaaacggcggcgtttggcattccgatc
gtagaaaaagtggatgtgaaaaacggcgccattcaggcgcttgtggtcgcgccgacgcgt
gagctcgccatccaagtatcagaagagctgtacaaaatcggcgccgtcaagcgcgtgcgc
gttttgccgatttacggcggtcaagatatcgagcggcaaatccgtgctttgaaaaaacat
ccgcacgtgatcgtcgggacgccgggccgtattatcgaccatatcaaccgcgggacgctc
cgccttgagcatgtgcatacggtcgttctcgatgaggcggatgaaatgctcaatatgggc
tttatcgaagatattgaggcgattttaagccatgtgccggccgagcggcagacgttgctg
ttctcggcgacgatgccggatccgattcgccgcattgccgagcgcttcatgaacgagccg
gaacttgtcaaagtgaaggcaaaggaaatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttcttgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcgtcgtgtcgatgagctggcggaggcgctc
aacttgcgaggctatgcagcggaaggcattcacggtgatttaagccaagcgaaacggctg
tcggtgctgcgcaagtttaaggaaggtgcgattgaaattttagtggcgacggatgttgcg
gcgcgcggcttggatatttccggcgtaacgcacgtgtacaactttgatattccgcaagac
ccggaaagctatgtccaccggattgggcgcaccgggcgcgccggcaagacaggggtggcg
atgacgtttgtcactccaagggagatcggccagcttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccgacacttgatgaggcgctcgaaggccaacagcgt
atcgcgatcgaaaagcttctcaacgtcgtggagaccgaaaacctgtcattttacaaacgg
gcagcggaagaattgcttgaagagcacgattcggtaacgattgtcgctgcctgcttgaaa
atgttgacgcgcgagccggatacgacgccggtgcaattgacggaagaaccgcctttagcg
gtcaagcgggagaaaaaacggggcggccgcccggacggctcagcccgcagccggacgaag
aaacggcggattacggcgcattaa
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