Geobacillus sp. GHH01: GHH_c23340
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Entry
GHH_c23340 CDS
T02455
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GHH_c23340 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggh03019
]
GHH_c23340 (recQ)
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c23340 (recQ)
Enzymes [BR:
ggh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GHH_c23340 (recQ)
Messenger RNA biogenesis [BR:
ggh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GHH_c23340 (recQ)
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GHH_c23340 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AGE22845
UniProt:
L7ZYS0
LinkDB
All DBs
Position
complement(2341954..2343477)
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AA seq
507 aa
AA seq
DB search
MDELTKTLRMKFGHASFRPGQREVAEDVLAGRDVLAMLPTGSGKSLCYQLPAYLLQGSVL
IVSPLVSLMEDQVEQLRRRGEKRVIAFHSLLDAEEKWQALASLAEFRFIYASPEMLQSAK
FLTALRRVCISLFVVDEAHCISQWGYDFRPDFLKLGEIRRALGAPPCLALTATAPPEVQE
DIIRTLGMDGARRHIHSVDRPNIALCVEHCSSTEDKAARLADYAKRLEGPGIIYFSSRQW
AEEMARRLEQCGAGRVAYYHAGMDGEQRLLVQQQFVYGQLDIVCCTSAFGMGVNKENVRF
VLHFHMPAQLEAYVQEIGRAGRDGAPSLAVLFYADGDRAMAQAVAEAELLSPRELREWCW
RLPEGAGWEAAMATLEAAGFTDVQKRLLAYFLEREQRAMPGWLTAEAKERLYGRMAAAIE
ARRRWKRKKLQEMDEWVHLSSCRRQALVRAFGEELTDQQNVCCDRCGLSLDGYERAVRRP
EEAPVRHWREELWDMLFGGGRTNETAK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttggacgagttgacgaaaacgctgcgcatgaagttcggacatgcttcattccgcccgggt
cagcgggaagtggcggaagatgtgcttgctgggcgcgacgtgctggcgatgctgccgacc
ggaagcggcaagtcgctttgctatcagctgccagcgtatttgcttcaaggcagtgtgctg
atcgtttcgccgcttgtgtcgctcatggaggaccaagtcgagcagttgcgccggcgcggg
gaaaagcgagtgattgcttttcacagcctgcttgatgccgaagaaaaatggcaggcgctc
gcttcgcttgcggagtttcgctttatttacgcgtcgccggagatgctgcagtcggcaaaa
tttttaacggcgcttcggcgcgtatgcatttcgctttttgtcgtcgatgaagcgcactgc
atttctcaatggggatatgactttcgcccggactttttaaagcttggggagatccggcgc
gcgctcggggccccgccgtgtttggcgttgacggcgacggcgccgcccgaggtgcaggag
gatattattcgcacgctcgggatggatggcgcccgccgccatattcattccgtcgatcgt
ccgaacatcgccttgtgcgtggagcattgttcatcaacggaggacaaagcggcgcgcttg
gccgattatgccaagcgtctcgaaggcccgggaatcatttatttttcgagccgtcaatgg
gcggaagagatggcgcgccggctcgaacagtgcggcgcggggcgggtcgcctattaccat
gccggcatggacggggagcaacggctgctcgtgcagcagcaatttgtctacggtcagctt
gacatcgtatgttgtacaagcgcattcggcatgggcgtgaacaaagaaaacgtccgattt
gtgcttcattttcatatgccggcccagctcgaggcgtacgtgcaggaaatcgggcgcgcg
gggcgcgacggagcgccaagccttgctgtgttattttatgcggacggcgaccgggccatg
gcccaggcggtggcggaggccgagctgttaagtccgcgcgagctgcgtgagtggtgttgg
cggctgccggaaggagccggatgggaagcggcgatggcgacgctcgaggctgccggattc
accgacgtacaaaagcggctgttggcgtattttttagaacgggaacaacgggcgatgcct
ggttggctgacagcggaggcgaaagagcggctgtacggcaggatggcagccgccatcgag
gcgcggcggcgttggaagcggaaaaaactgcaggaaatggatgaatgggtgcacttgtct
tcgtgtcggcgtcaagcgcttgtccgcgcgtttggcgaggagctgacggatcagcagaat
gtctgctgcgatcgctgcgggctttcgcttgacggctatgaacgagccgtccgccgtccg
gaggaggcgccggttcgccattggcgcgaggagttgtgggacatgctttttggcgggggg
cggacgaatgaaacggcaaagtga
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