Gordonia iterans: C6V83_00230
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Entry
C6V83_00230 CDS
T05370
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
git
Gordonia iterans
Brite
KEGG Orthology (KO) [BR:
git00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
git03032
]
C6V83_00230 (topA)
03400 DNA repair and recombination proteins [BR:
git03400
]
C6V83_00230 (topA)
Enzymes [BR:
git01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C6V83_00230 (topA)
DNA replication proteins [BR:
git03032
]
Prokaryotic type
DNA Topoisomerases
C6V83_00230 (topA)
DNA repair and recombination proteins [BR:
git03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C6V83_00230 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Rep_1B
Motif
Other DBs
NCBI-ProteinID:
AVL98941
UniProt:
A0A2S0KB60
LinkDB
All DBs
Position
complement(38669..41728)
Genome browser
AA seq
1019 aa
AA seq
DB search
MAATDTDSSAVRRLVIVESPTKARKIAGYLGGNYIVESSRGHIRDLPRGAADVPAKYKGQ
SWARLGVNVDEGFEPLYVVSADKKSTVTELKSLLKQVDELYLATDGDREGEAIAWHLLET
LKPKIPVKRMVFHEITESAIRAAAENPRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKV
MPKLSAGRVQSVATRIIVDRERERMAFVSAGYWDIAATMDAGADASPRRFASKLLSVDDA
RVATGRDFGPDGKLKKADSVVVLDEAKASALAAGLQNAALTVTSVEEKPYTRRPYAPFMT
STLQQEAGRKLRFSSDRTMRTAQRLYENGYITYMRTDSTTLSESAITAARNQARELYGPE
FVHPTPRQYNRKVKNAQEAHEAIRPAGDTFRTPGQLASALSTDEFRLYELIWQRTVASQM
ADAKGTTMSLRIGGTATTGEQVIFSSSGRTITFPGFLSAYVESVDDQAAGQSDDAENRLP
NLREGQSLTAAELTADGHTTNPPARYTEASLVKVLEDLGIGRPSTYASIIGTIQDRGYVL
KKGNALVPSWVAFAVVGLLEGYFDSLVDYDFTASLEDDLDEIANGDADRTEWLSEFYFGR
ADAQEESDQDDAAHTIGRLGGLKKLVGVNLEGIDAREVNSIKVHDDAQGRPIYVRVGRFG
PYLERNVAPEGAEPDLQRANLPADMTPDELTVEVAEKLFSTPQEGRVLGVDPVTGHQIVA
KEGRYGPYVTEILPDDKDEDGDAAPATIPPGPTPRDPSSPLGAGAGESGPAGSDEVVALD
EVGSVATKAPAKVAKTSTQRKTAAKKAAKPKPRTGSLLRSMDIATVTLEDALKLLSLPRV
VGKDPESGEEITAQNGRYGPYLKKGTDSRSLANEEQMFTVTLDEALKLYAEPKRRGRAAA
APPLRELGEDSASGKPMVIKDGRFGPYVTDGETNASLRKGDEVATITPDRAMELLAERRA
RGPAKKAAKKTTKKAAAKKTAAKKAAAKKTAAKKTATKKAATKKTATKKTATKKAAAED
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccaccgataccgattcctccgccgtgcggcggctcgtcatcgtcgagtcgccg
accaaggcccgcaagatcgcgggctacctcggcggcaactacatcgtggaatcctcccgc
gggcacatccgcgatctgccccgcggcgccgcggacgtgccggcgaagtacaaggggcag
tcgtgggccaggctcggcgtgaacgtcgacgagggcttcgagccgctgtacgtggtgtcc
gccgacaagaagtcgacggtcaccgaactgaagtccctgctcaagcaggtcgacgagctc
tacctggcgacggacggcgaccgtgagggcgaggccatcgcctggcacctgctggagacg
ctcaagccgaagatccccgtcaagcggatggtcttccacgagatcaccgaatccgcgatc
cgagctgccgccgagaacccccgcgatctcgacatcgacctggtcgacgcccaggagacc
cgccgcatcctcgaccggctctacggctacgaggtgtcgccggtgctgtggaagaaggtg
atgccgaagctgtcggccggccgtgtgcagtcggtggccacccgcatcatcgtcgaccgg
gagcgcgagcggatggccttcgtctccgccggctactgggacatcgcagcaaccatggat
gccggcgccgatgcgtcgccgcggaggttcgcctccaaactgctgtcggtcgacgacgcc
cgcgtggccaccggccgcgacttcggcccggacggcaagctgaagaaggccgactccgtc
gtcgtgctcgacgaggccaaggcgtccgcgctggccgccggcctgcagaacgcggcgctc
accgtcacctcggtggaggagaagccgtacacgcggcgcccgtacgccccgttcatgacg
tcgactctgcagcaggaggccggccgcaagctgcgcttctcgtcggaccgcaccatgcgc
accgcgcagcgcctgtacgagaacggctacatcacctacatgcgtaccgactcgacgacg
ctcagcgagtcggcgatcaccgcggcacggaatcaggcgcgggaactgtacggaccagag
ttcgtccatccgacaccgcgccagtacaaccggaaggtcaagaacgcgcaggaggcgcac
gaggcgatccgccccgccggcgacaccttccgcacccccggccagctggcatctgcgctg
agcaccgatgagttccgcctgtacgaactgatctggcagcgcaccgtcgcctcgcagatg
gccgacgccaagggcaccaccatgagcctgcggatcgggggcaccgccaccacgggagag
caggtgatcttcagctcgtccggccgcaccatcactttcccgggcttcctctcggcatac
gtggagagcgtcgacgatcaggccgccggacagtccgacgacgccgagaaccgcctgccg
aacctgcgcgagggccagtcgctgaccgcggccgagctgaccgcggacgggcacaccacc
aatccgccggcccgctacaccgaggcctcgctggtgaaggtgctcgaagatctcggtatc
gggcggccgtcgacctacgcgtcgatcatcggcaccattcaggaccgcggctacgtgctg
aagaagggcaacgccctggtgccgtcctgggtcgcgttcgccgtggtcgggctgctggag
gggtatttcgacagcctcgtcgactacgacttcaccgcctcgctggaagacgacctcgac
gagatcgccaacggtgacgccgaccgcaccgaatggctcagcgagttctacttcggccgc
gcggatgcgcaggaggagtccgaccaggacgacgccgcacacaccatcgggcggctcggc
ggactcaagaagctcgtcggcgtgaacctcgagggcatcgacgcccgcgaggtgaactcg
atcaaggtgcacgacgacgcgcaggggcgcccgatctacgtccgagtgggccgcttcggt
ccgtacctggagcgcaacgtggcccccgagggcgccgagccggatctgcagcgcgccaac
cttccggcggacatgacgccggacgagctgaccgtcgaggtggccgagaagctcttctcc
acgccccaggagggtcgggtgctgggcgtggacccggtgaccggacaccagatcgtggcc
aaggaaggtcgctacgggccgtacgtcaccgagatcctccccgacgacaaggacgaggac
ggcgacgcggcgcccgccaccatcccgccggggccgactccgcgagacccgtcgtcgccg
ctgggagccggtgccggagagtcgggccccgccggttcggacgaggtcgtcgcgctcgac
gaggtcgggtcggtggccaccaaggcgccggccaaggttgcgaagacctcgacccaacgg
aagaccgcggccaagaaggcggccaagccgaagccgcgcaccggatcgctgctgcgcagc
atggacatcgcgaccgtgaccctcgaggatgccctcaagctgctttcgctgccgcgggtg
gtgggcaaggatcccgagagcggcgaggagatcaccgcgcagaacggccgatacggcccg
tatctgaagaagggcaccgactcccgttcgctggcgaacgaagagcagatgttcaccgtg
actctcgatgaggcgctgaagctgtacgccgagccgaagcggcgcggtcgtgcggcggcc
gctccgccgttgcgtgaactgggcgaggactcggccagtggcaagccgatggtgatcaag
gacggccgcttcggtccgtacgtcaccgacggggagaccaacgcgagcctgcgcaaggga
gacgaggtcgccaccatcacccccgaccgggcgatggagctactggccgagcgccgcgcc
aggggcccggccaagaaggctgccaagaagacgacgaagaaggctgcggccaagaagact
gcggcgaagaaggccgcggccaagaagaccgcggccaagaagaccgcaaccaagaaggcc
gcaaccaagaagaccgcaaccaagaagaccgcaaccaagaaggccgcggccgaggactag
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