KEGG   Gordonia iterans: C6V83_00230
Entry
C6V83_00230       CDS       T05370                                 
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
git  Gordonia iterans
Brite
KEGG Orthology (KO) [BR:git00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:git03032]
    C6V83_00230 (topA)
   03400 DNA repair and recombination proteins [BR:git03400]
    C6V83_00230 (topA)
Enzymes [BR:git01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     C6V83_00230 (topA)
DNA replication proteins [BR:git03032]
 Prokaryotic type
  DNA Topoisomerases
   C6V83_00230 (topA)
DNA repair and recombination proteins [BR:git03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      C6V83_00230 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim HC2 Toprim_4 Toprim_2 Rep_1B
Other DBs
NCBI-ProteinID: AVL98941
UniProt: A0A2S0KB60
LinkDB
Position
complement(38669..41728)
AA seq 1019 aa
MAATDTDSSAVRRLVIVESPTKARKIAGYLGGNYIVESSRGHIRDLPRGAADVPAKYKGQ
SWARLGVNVDEGFEPLYVVSADKKSTVTELKSLLKQVDELYLATDGDREGEAIAWHLLET
LKPKIPVKRMVFHEITESAIRAAAENPRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKV
MPKLSAGRVQSVATRIIVDRERERMAFVSAGYWDIAATMDAGADASPRRFASKLLSVDDA
RVATGRDFGPDGKLKKADSVVVLDEAKASALAAGLQNAALTVTSVEEKPYTRRPYAPFMT
STLQQEAGRKLRFSSDRTMRTAQRLYENGYITYMRTDSTTLSESAITAARNQARELYGPE
FVHPTPRQYNRKVKNAQEAHEAIRPAGDTFRTPGQLASALSTDEFRLYELIWQRTVASQM
ADAKGTTMSLRIGGTATTGEQVIFSSSGRTITFPGFLSAYVESVDDQAAGQSDDAENRLP
NLREGQSLTAAELTADGHTTNPPARYTEASLVKVLEDLGIGRPSTYASIIGTIQDRGYVL
KKGNALVPSWVAFAVVGLLEGYFDSLVDYDFTASLEDDLDEIANGDADRTEWLSEFYFGR
ADAQEESDQDDAAHTIGRLGGLKKLVGVNLEGIDAREVNSIKVHDDAQGRPIYVRVGRFG
PYLERNVAPEGAEPDLQRANLPADMTPDELTVEVAEKLFSTPQEGRVLGVDPVTGHQIVA
KEGRYGPYVTEILPDDKDEDGDAAPATIPPGPTPRDPSSPLGAGAGESGPAGSDEVVALD
EVGSVATKAPAKVAKTSTQRKTAAKKAAKPKPRTGSLLRSMDIATVTLEDALKLLSLPRV
VGKDPESGEEITAQNGRYGPYLKKGTDSRSLANEEQMFTVTLDEALKLYAEPKRRGRAAA
APPLRELGEDSASGKPMVIKDGRFGPYVTDGETNASLRKGDEVATITPDRAMELLAERRA
RGPAKKAAKKTTKKAAAKKTAAKKAAAKKTAAKKTATKKAATKKTATKKTATKKAAAED
NT seq 3060 nt   +upstreamnt  +downstreamnt
gtggccgccaccgataccgattcctccgccgtgcggcggctcgtcatcgtcgagtcgccg
accaaggcccgcaagatcgcgggctacctcggcggcaactacatcgtggaatcctcccgc
gggcacatccgcgatctgccccgcggcgccgcggacgtgccggcgaagtacaaggggcag
tcgtgggccaggctcggcgtgaacgtcgacgagggcttcgagccgctgtacgtggtgtcc
gccgacaagaagtcgacggtcaccgaactgaagtccctgctcaagcaggtcgacgagctc
tacctggcgacggacggcgaccgtgagggcgaggccatcgcctggcacctgctggagacg
ctcaagccgaagatccccgtcaagcggatggtcttccacgagatcaccgaatccgcgatc
cgagctgccgccgagaacccccgcgatctcgacatcgacctggtcgacgcccaggagacc
cgccgcatcctcgaccggctctacggctacgaggtgtcgccggtgctgtggaagaaggtg
atgccgaagctgtcggccggccgtgtgcagtcggtggccacccgcatcatcgtcgaccgg
gagcgcgagcggatggccttcgtctccgccggctactgggacatcgcagcaaccatggat
gccggcgccgatgcgtcgccgcggaggttcgcctccaaactgctgtcggtcgacgacgcc
cgcgtggccaccggccgcgacttcggcccggacggcaagctgaagaaggccgactccgtc
gtcgtgctcgacgaggccaaggcgtccgcgctggccgccggcctgcagaacgcggcgctc
accgtcacctcggtggaggagaagccgtacacgcggcgcccgtacgccccgttcatgacg
tcgactctgcagcaggaggccggccgcaagctgcgcttctcgtcggaccgcaccatgcgc
accgcgcagcgcctgtacgagaacggctacatcacctacatgcgtaccgactcgacgacg
ctcagcgagtcggcgatcaccgcggcacggaatcaggcgcgggaactgtacggaccagag
ttcgtccatccgacaccgcgccagtacaaccggaaggtcaagaacgcgcaggaggcgcac
gaggcgatccgccccgccggcgacaccttccgcacccccggccagctggcatctgcgctg
agcaccgatgagttccgcctgtacgaactgatctggcagcgcaccgtcgcctcgcagatg
gccgacgccaagggcaccaccatgagcctgcggatcgggggcaccgccaccacgggagag
caggtgatcttcagctcgtccggccgcaccatcactttcccgggcttcctctcggcatac
gtggagagcgtcgacgatcaggccgccggacagtccgacgacgccgagaaccgcctgccg
aacctgcgcgagggccagtcgctgaccgcggccgagctgaccgcggacgggcacaccacc
aatccgccggcccgctacaccgaggcctcgctggtgaaggtgctcgaagatctcggtatc
gggcggccgtcgacctacgcgtcgatcatcggcaccattcaggaccgcggctacgtgctg
aagaagggcaacgccctggtgccgtcctgggtcgcgttcgccgtggtcgggctgctggag
gggtatttcgacagcctcgtcgactacgacttcaccgcctcgctggaagacgacctcgac
gagatcgccaacggtgacgccgaccgcaccgaatggctcagcgagttctacttcggccgc
gcggatgcgcaggaggagtccgaccaggacgacgccgcacacaccatcgggcggctcggc
ggactcaagaagctcgtcggcgtgaacctcgagggcatcgacgcccgcgaggtgaactcg
atcaaggtgcacgacgacgcgcaggggcgcccgatctacgtccgagtgggccgcttcggt
ccgtacctggagcgcaacgtggcccccgagggcgccgagccggatctgcagcgcgccaac
cttccggcggacatgacgccggacgagctgaccgtcgaggtggccgagaagctcttctcc
acgccccaggagggtcgggtgctgggcgtggacccggtgaccggacaccagatcgtggcc
aaggaaggtcgctacgggccgtacgtcaccgagatcctccccgacgacaaggacgaggac
ggcgacgcggcgcccgccaccatcccgccggggccgactccgcgagacccgtcgtcgccg
ctgggagccggtgccggagagtcgggccccgccggttcggacgaggtcgtcgcgctcgac
gaggtcgggtcggtggccaccaaggcgccggccaaggttgcgaagacctcgacccaacgg
aagaccgcggccaagaaggcggccaagccgaagccgcgcaccggatcgctgctgcgcagc
atggacatcgcgaccgtgaccctcgaggatgccctcaagctgctttcgctgccgcgggtg
gtgggcaaggatcccgagagcggcgaggagatcaccgcgcagaacggccgatacggcccg
tatctgaagaagggcaccgactcccgttcgctggcgaacgaagagcagatgttcaccgtg
actctcgatgaggcgctgaagctgtacgccgagccgaagcggcgcggtcgtgcggcggcc
gctccgccgttgcgtgaactgggcgaggactcggccagtggcaagccgatggtgatcaag
gacggccgcttcggtccgtacgtcaccgacggggagaccaacgcgagcctgcgcaaggga
gacgaggtcgccaccatcacccccgaccgggcgatggagctactggccgagcgccgcgcc
aggggcccggccaagaaggctgccaagaagacgacgaagaaggctgcggccaagaagact
gcggcgaagaaggccgcggccaagaagaccgcggccaagaagaccgcaaccaagaaggcc
gcaaccaagaagaccgcaaccaagaagaccgcaaccaagaaggccgcggccgaggactag

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